Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq34 87.8 2e-12 >seq34 Length=27469976 Score = 87.8 bits (96), Expect = 2e-12 Identities = 139/201 (69%), Gaps = 9/201 (4%) Strand=Plus/Minus Query 2240 ACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGA 2299 ||||| | |||| || ||| |||||| | |||||||| ||||| ||| |||| ||||| Sbjct 9984711 ACTGTTTGGGAATAAGACCTGTGAGATCAACCTGACCTGCTCTGTGGAGAATCCAAATGA 9984652 Query 2300 CAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAGCCCAACCTCAC 2359 || |||| |||| |||| || || | || | || | || | ||||||| Sbjct 9984651 CAGTGTCTCATTCACATGGCAGCCCCTAGGAAGGATGGGTCCAG---------ACCTCAC 9984601 Query 2360 GACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGC 2419 | |||||||||||| || || ||| |||||||||| ||||| || |||| | Sbjct 9984600 CATCTCCTGGGACCCTGAGATTTCCAATGAACAGAACTACAGTTGCATAGCTAAAAATCC 9984541 Query 2420 TGTGAGCAATCTCTCTTTCAC 2440 ||| | |||| | || | ||| Sbjct 9984540 TGTCAACAATTTATCCTCCAC 9984520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629264699073920