Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq21 118 1e-21 seq9 111 2e-19 >seq21 Length=46401353 Score = 118 bits (130), Expect = 1e-21 Identities = 103/128 (80%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| || || || | || |||||||| |||| ||| || Sbjct 19708523 TCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCTTG 19708464 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| ||||||||||| ||| Sbjct 19708463 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGGCT 19708404 Query 37320 ACAAGACG 37327 |||| ||| Sbjct 19708403 ACAACACG 19708396 Score = 86.0 bits (94), Expect = 7e-12 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| ||||||||| | ||||| || || |||| |||| ||||| || || ||||| |||| Sbjct 19710095 CATCACTCCCATTCTCTGATACTCGCCTACTC-TCTTCTCGAAGAAGTTAGTCTTCCCTT 19710037 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| || || |||||||| ||||||||||| Sbjct 19710036 CCAGTGAAATGTTCTCCATAAAGTCAAATGGATT 19710003 >seq9 Length=85640724 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | |||||| || | Sbjct 49095632 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 49095691 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 49095692 TTAGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 49095751 Query 37318 CTAC 37321 |||| Sbjct 49095752 CTAC 49095755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592299385886080