Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq7 187 2e-42 seq28 165 7e-36 seq5 147 2e-30 seq8 93.3 3e-14 >seq7 Length=94539749 Score = 187 bits (206), Expect = 2e-42 Identities = 363/534 (68%), Gaps = 13/534 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || ||||| || || | |||||| ||||| || || ||||| ||||| Sbjct 47936679 TGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGT 47936738 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | || | |||||| || || ||||| || || || | || | ||| ||| Sbjct 47936739 AAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTT 47936798 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC---- 29940 |||||||||| ||||| || ||||||||| ||||| || || ||||| ||| Sbjct 47936799 CCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCG 47936858 Query 29941 -----ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAA 29995 ||||| || || |||||||| ||||| || || |||| | || ||| || | Sbjct 47936859 GGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCACCTAGA 47936918 Query 29996 ACTGACACATGGTGTGGCACGGAGG-AAGAGCCA-TGAGGCCCAAGTCTTTGGGGTTCCA 30053 |||| || | || ||||| ||||| || | || ||||| | |||||| |||||||| Sbjct 47936919 ACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGA--AGGTCTTTCGGGTTCCA 47936976 Query 30054 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30113 || ||| || ||| | ||||| || ||||| | |||| ||| | | ||||| Sbjct 47936977 AGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTTG 47937036 Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30173 |||||| || || || || || || |||| |||| || | | ||||| || || Sbjct 47937037 CAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAA 47937096 Query 30174 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30233 ||||||||||| || || || || || || | ||||| ||||| || ||| || Sbjct 47937097 ATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCC 47937156 Query 30234 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287 | ||||||||||||||| || || ||| | ||||||||||| || ||||| Sbjct 47937157 CAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTT 47937210 >seq28 Length=34889373 Score = 165 bits (182), Expect = 7e-36 Identities = 410/615 (67%), Gaps = 12/615 (2%) Strand=Plus/Plus Query 29765 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 29824 |||| || |||| || || | || ||||| | |||||| | || ||||| ||||| Sbjct 14578227 TGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCTCAGTGTGATTCAGGT 14578286 Query 29825 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29884 | | | | || ||||||| || | ||||| || || || | || || |||| ||| | Sbjct 14578287 AAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 14578346 Query 29885 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC-CCGAGCCCCATG 29943 | |||| | ||||| | || ||||||||| | || || ||| || |||||| || Sbjct 14578347 CAATCAC--AGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCC-TG 14578403 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG--CTCACGTAAAACTGAC 30001 || || || | || ||| |||| || || ||| | || ||||| | ||||| | Sbjct 14578404 TCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCAC--AGAACTGGC 14578461 Query 30002 ACATGGTGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30059 | | | ||||| ||||| || ||||| |||| | | |||| | ||||| | || Sbjct 14578462 AAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGA--AGGCCTTTTAGATTCCAAACACA 14578519 Query 30060 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30119 || || ||| | ||||| || |||||| | |||| ||| || ||||||||||| Sbjct 14578520 CATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTG 14578579 Query 30120 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30179 || || || || || |||| ||| || | || || || || |||||||| Sbjct 14578580 GTCTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCCT 14578639 Query 30180 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30239 |||||| || || || || || || ||||| | ||| | | || ||| | Sbjct 14578640 CCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAGTCCCAGGCT 14578699 Query 30240 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTC 30299 |||||||||||||| ||| || |||| ||||||||||| | ||||| || || || Sbjct 14578700 GTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTTC 14578759 Query 30300 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30359 ||| | || ||||| | ||| | ||||||| |||||||| || ||| | || || Sbjct 14578760 TTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCAGAA 14578819 Query 30360 GACCCTCTTGGTCGT 30374 || |||||| || Sbjct 14578820 CACAAGCTTGGTTGT 14578834 >seq5 Length=100893473 Score = 147 bits (162), Expect = 2e-30 Identities = 129/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || || Sbjct 90679540 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 90679599 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 90679600 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 90679659 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 ||||| ||||| || | || |||||| ||||| || ||||| Sbjct 90679660 ACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 90679700 Score = 98.7 bits (108), Expect = 8e-16 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30149 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30208 |||| || | || | ||| || |||||||||||||| || || || ||||| || | | Sbjct 90690678 TCATATCTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAAT 90690737 Query 30209 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||| ||||||| | ||| ||| ||||||||||||||| || || ||||| | Sbjct 90690738 CTCCTTCTTCCCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 90690797 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| || || ||||| | || ||||| || Sbjct 90690798 CCCAGATCTTCACTCCCTTAGAAGACAGTTCTTTAGCATTGGTGGATCC 90690846 >seq8 Length=93792748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 112111 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 112170 || ||||| |||| || || || ||| ||| |||||||||||| || || ||||||||| Sbjct 84117452 CTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGAATGGAGAAC 84117511 Query 112171 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 || ||||| |||||||| ||||||| ||||| || ||| Sbjct 84117512 CAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 84117550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408605886976496