Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq27 187 5e-42 seq18 93.3 8e-14 seq80 91.5 3e-13 >seq27 Length=35828716 Score = 187 bits (206), Expect = 5e-42 Identities = 187/243 (77%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 30299124 AGCAGCTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 30299183 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || || ||||| || ||||| || | ||||||| |||||| Sbjct 30299184 TCCCGGAGGAGGCCGGCAGTGTTCGACAGCCCCGCGTTCTCGGCCTTGAGCGTCTTCACC 30299243 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 30299244 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGA 30299303 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||||| || | ||| || ||| | |||||||| |||||||| ||||||| ||| || Sbjct 30299304 CGGTTCCTCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 30299363 Query 241625 GAC 241627 ||| Sbjct 30299364 GAC 30299366 Score = 122 bits (134), Expect = 2e-22 Identities = 157/215 (73%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||||| | ||| Sbjct 23783083 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTGGCGGTGGACGCCAG- 23783025 Query 241475 CCTGCGTTGTCAGACT--TGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCA 241532 || ||| || | || | ||| ||||||||| ||||| || |||| |||||| |||| Sbjct 23783024 -CTCCGTATTCTGGCTCTTAAGCGTCTTCACTTTTTCCTCGAGGCGCGAGATGCGCTCCA 23782966 Query 241533 GTTTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCT 241592 | || || |||||| |||| ||| || | ||| || || || | || ||||| |||| Sbjct 23782965 GCTTACGTTTGCGGCACTTGGAGGCGGCGATGCGATTGCGCAGCCGTTTGCGTTCTGCCT 23782906 Query 241593 TGATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||||| ||||| ||||||||||| || ||| Sbjct 23782905 TGATGCGCTCCTGCGTGTCCATGTCGATGGGCGAC 23782871 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || || ||||| ||||||| Sbjct 30299161 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTCGACAGCCCCGCGT 30299220 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 30299221 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 30299275 >seq18 Length=50992964 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 36972390 TTCACTTTTTCCTCCAGCCGGGCGATCCTCTCCAGCTTTCTTTTCCGGCACTTGGAGGCA 36972331 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | |||||||||||| || ||||| |||||||||| Sbjct 36972330 GCGATGCGGTTCCTCATGCGCTTCCTTTCCGCCTTGATCCGCTCCTGTGACTCCATGTCG 36972271 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 36972270 ATGGGGGAC 36972262 >seq80 Length=8685383 Score = 91.5 bits (100), Expect = 3e-13 Identities = 96/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 8324367 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 8324308 Query 213588 TTTGACTTTGCGTTGGCAG-AATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 || |||| || | ||| |||| |||||||||||||| |||| || || ||| ||| Sbjct 8324307 TTGCTCTTT-CGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTTTCTGTCTG 8324249 Query 213647 GGAC 213650 ||| Sbjct 8324248 AGAC 8324245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931505412935680