Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq40 208 5e-48 seq139 147 1e-29 seq59 123 2e-22 seq85 96.9 2e-14 >seq40 Length=22139007 Score = 208 bits (230), Expect = 5e-48 Identities = 406/595 (68%), Gaps = 6/595 (1%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 |||| |||| |||||| | || || || ||| ||||| | ||| | || | | || Sbjct 15767329 TGCAGTTGGCATTGATCTTGGCACAACCTACTCCTGTGTGGGTGTCTTCCAGCACAGGAA 15767388 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| || |||||||| ||||| || || || |||| || || | |||| ||||||| Sbjct 15767389 AGTGGAGATAATTGCAAATGATCAGGGCAACCGAACCACCCCGAGCTGTGTTGCTTTTAC 15767448 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 ||| || ||||| | ||||| ||||| || || |||||| |||| ||||| || Sbjct 15767449 TGATACCGAACAATTGATTGGTGATGCCGCGAAGAATCAAGTTGCAATGAATCCCACCAA 15767508 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || ||||| |||| ||| | ||||||| | | ||||||||| | |||||| || Sbjct 15767509 CACAGTTTTTTATGCCAAACGTCTGATTGGATGAAGGTTTGATGATGCTGTTGTCCAGTC 15767568 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||||||| |||||||| || |||| | || | || || | || | | ||| Sbjct 15767569 TGATATGAAGCATTGGCCCTTCGTGGTGGTGAACGATGCAGGCAGGCCCAAGGTCCAAGT 15767628 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||| | | || || || ||| |||| | || || | || || |||||||| Sbjct 15767629 GGAATATAAG--GGAGAGACCAAAAGTTTTTATTCAGAGGAAGTGTCATCTATGGTTTTT 15767686 Query 474686 GCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAA-GTAACTGATGCAGTAAT 474744 | || ||||| ||| || | || |||||| |||| || || |||| || | Sbjct 15767687 ACAAAGATGAAGGAAATTGCAGAAGCCTACCTTGGA-AAGACTGTTACCAATGCTGTTGT 15767745 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||||| ||||| || |||||||| ||||| ||||| || || |||||||| |||| || Sbjct 15767746 CACTGTACCAGCCTACTTTAATGACTCTCAGCGTCAGGCTACCAAAGATGCTGGAACCAT 15767805 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| || || ||||| | | || || || || ||||| || || || |||||||||| Sbjct 15767806 TGCTGGCCTCAATGTGCTGAGAATCATCAACGAGCCAACTGCTGCTGCTATTGCTTATGG 15767865 Query 474865 TCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATTGTGGAGGT 474919 | | || || || || ||| |||||| | |||||||||| |||||| Sbjct 15767866 TTTAGACAAAAAGGTTGGTGCTGAAAGAAATGTGCTGATCTTTGATTTGGGAGGT 15767920 Score = 199 bits (220), Expect = 3e-45 Identities = 461/685 (67%), Gaps = 11/685 (2%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAG-- 475553 ||||||||||||||||| ||||| |||| ||||| || || | | | |||||| Sbjct 15768107 ACTGCTTGTGAACGTGCAAAGCGCACTCTATCTTCCAGCACCCAGGCCAGTATTGAAGAG 15768166 Query 475554 -TTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAA 475612 |||||||||||| ||||||||| || | |||| |||||| || |||||| Sbjct 15768167 ATTGATTCTCTTTATGAAGGAATCGACTTCTATACCTCTATTACCCATGCCCGGTTTGAA 15768226 Query 475613 GATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGAT 475672 || | | |||| || || || || || || || ||| || || ||| Sbjct 15768227 GAATTGAATGCTGACCTATTCCATGGCACCCAGGACCCTGTGGAGAAAGCCCTTAGGGAT 15768286 Query 475673 TCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATT 475732 | || || ||||| ||||| ||||||| || || || || || ||||| || | ||| Sbjct 15768287 ACCAAGCTAGACAAGTCACAGATCCATGACATCGTCCTGGTGGGTGGTTCTACTCGTATT 15768346 Query 475733 CCAAAAATAAGAGAAATGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGT 475791 || || || ||||| | |||| || | || ||||| ||| | |||| | || | Sbjct 15768347 CCCAAGATTC-AGAAACTCCTTCAGGATTTCTTCAATGGAAAAGAACTAAACAAGAGCAT 15768405 Query 475792 AAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCA 475851 ||||||||||| |||||||| || || || |||||||| ||||| || ||||| || | Sbjct 15768406 CAATCCTGATGAGGCTGTTGCTTACGGTGCAGCTGTCCAGGCAGCCATCTTATCTGG--A 15768463 Query 475852 ATCAGACGAGAAACTAAATAATA-TTGTACTTGTT-GACGTAACTCCACTTTCATTAGGT 475909 || | |||| | || | |||| || || || || ||||| ||||| | ||| Sbjct 15768464 GACAAATCTGAAAATGTTCAAGATTTGTTGTTCTTGGATGTTACTCCTCTTTCCCTTGGT 15768523 Query 475910 CTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGC 475969 | ||||| | ||| || | ||||||| || || | | |||||| | || || | | Sbjct 15768524 ATCGAAACTGCTGGTGGAGTCATGACTATCCTCATCAAGCGCAATACTACCATTCC-TAC 15768582 Query 475970 AAA-AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAAT 476028 ||| | || | || | || || ||||| || || | || ||| || | Sbjct 15768583 AAAGCAGACACAGACCTTCACAACCTACTCTGACAACCAGCCTGGCGTGCTCATTCAGGT 15768642 Query 476029 CTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGA 476088 | |||||||||| | || ||||| || ||| | ||| | ||| | || Sbjct 15768643 TTATGAAGGTGAATGTGCCACGACCAAAGACAACAACTTGCCTGGCAAGTTTGAACTCAC 15768702 Query 476089 AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGC 476148 || || |||||||| ||| | || |||||||| ||||| || ||||||||||||||||| Sbjct 15768703 TGGCATACCTCCTGCACCCCGTGGTGTTCCTCAGATTGAGGTCACTTTTGATATTGATGC 15768762 Query 476149 AAATGGTATTCTTAATGTTACTGCT 476173 || ||||| ||||||||| ||||| Sbjct 15768763 CAACGGTATCCTTAATGTTTCTGCT 15768787 >seq139 Length=1900517 Score = 147 bits (162), Expect = 1e-29 Identities = 333/496 (67%), Gaps = 6/496 (1%) Strand=Plus/Plus Query 474381 ATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTT 474440 |||| || || ||||| || ||||||||||| || || | || || || || || Sbjct 1326520 ATGGCAAGGTGGAAATTATCGCCAATGACCAGGGCAACCGCACCACCCCCAGCTACGTGG 1326579 Query 474441 CTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATC 474500 | || ||||| ||||| | || ||||| ||||| || || | || | || || | Sbjct 1326580 CCTTCACTGACACTGAGCGGCTCATTGGGGATGCGGCCAAGAACCAGGTAGCCATGAACC 1326639 Query 474501 CTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTG 474560 | |||||| | |||||||| || | ||||| || | || ||| ||||| | | Sbjct 1326640 CCCAGAATACTGTCTTTGATGCCAAGCGTTTGATCGGAAGGAAATTTAATGATCCTGTGG 1326699 Query 474561 TCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACC--ATA 474618 | ||||| || ||| | |||||||||| | ||||| |||| ||| || || || | Sbjct 1326700 TGCAATCAGACATGAAACTTTGGCCTTTTCAAGTGATCAATGATGGGGGCAAGCCCAAGG 1326759 Query 474619 TATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | | | | |||| ||| |||| |||| || | || || |||||||||| || Sbjct 1326760 TGTTGGTGTCCTACA--AAGGAGAAAATAAAGCTTTCTATCCTGAGGAAATTTCTTCTAT 1326817 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATG 474737 ||| | | || ||||| | || || ||| | | | | || || || || ||| Sbjct 1326818 GGTGCTGACTAAGATGAAGGAGACTGCTGAG-GCTTTTTTGGGCCACTCTGTCACCAATG 1326876 Query 474738 CAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGG 474797 | || || || || ||||| ||||| ||||| |||||||| || || || || ||||| | Sbjct 1326877 CTGTGATCACCGTGCCAGCCTATTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAG 1326936 Query 474798 GAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTG 474857 | || ||||| || ||||| || | || || || ||||| ||||| || || ||| Sbjct 1326937 GTGTTATAGCAGGACTCAATGTGCTAAGAATCATCAACGAACCTACAGCTGCTGCCATTG 1326996 Query 474858 CTTATGGTCTTGATAA 474873 | || ||| | ||||| Sbjct 1326997 CCTACGGTTTAGATAA 1327012 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || ||||||||||| ||||| ||||||||||| ||||| || || ||||| || ||||| Sbjct 1327839 GGAATTCCTCCTGCACCCAGGGGAGTTCCTCAGATTGAGGTGACCTTTGACATCGATGCC 1327898 Query 476150 AATGGTATTCTTAATGTTACTGC 476172 || |||||||| ||||| || || Sbjct 1327899 AACGGTATTCTCAATGTCACAGC 1327921 >seq59 Length=14585272 Score = 123 bits (136), Expect = 2e-22 Identities = 225/327 (69%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||||||||||||||| ||||| |||| ||||| || || | | | |||| || Sbjct 11339739 ACTGCTTGTGAACGTGCAAAGCGCACTCTATCTTCCAGCACCCAGGCCAGTATTGAGATT 11339680 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||||| ||||||||| || | |||| |||||| | || |||||||| Sbjct 11339679 GATTCTCTTTATGAAGGAATCGACTTCTATACCTCTATTACCCGTGCCCGGTTTGAAGAA 11339620 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | |||| || || | || | || || || || ||| || || ||| | Sbjct 11339619 TTGAATGCTGACCTATTCCGTGGCACCCTGGACCCTGTGGAGAAAGCCCTTAGGGATGCC 11339560 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || || ||||| ||||| ||||||| ||||| || || || ||||| || | ||||| Sbjct 11339559 AAGCTAGACAAGTCACAGATCCATGACATTGTCCTGGTGGGTGGTTCTACTCGTATTCCC 11339500 Query 475736 AAAATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAAA 475794 || || ||||| | |||| || | || ||||| ||| | | || | || | || Sbjct 11339499 AAGAT-TCAGAAACTCCTTCAGGATTTCTTCAATGGAAAAGAACTGAACAAGAGCATCAA 11339441 Query 475795 TCCTGATGAAGCTGTTGCATATGGAGC 475821 ||||||||| |||||||| || || || Sbjct 11339440 TCCTGATGAGGCTGTTGCTTACGGTGC 11339414 Score = 102 bits (112), Expect = 5e-16 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 476051 ACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGA 476110 || ||||| || ||| ||||| | ||| | || || || |||||||| ||| | Sbjct 11338735 ACCAAAGACAACAACCTGCTTGGCAAGTTTGAACTCACTGGCATACCTCCTGCCCCCCGT 11338676 Query 476111 GGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGGTATTCTTAATGTTACT 476170 || |||||||| ||||| || ||||||||||||||||| || ||||||||||||||| || Sbjct 11338675 GGTGTTCCTCAGATTGAGGTCACTTTTGATATTGATGCCAACGGTATTCTTAATGTTTCT 11338616 Query 476171 GCTTGTGATAA 476181 ||| ||||| Sbjct 11338615 GCTGTGGATAA 11338605 Score = 89.7 bits (98), Expect = 3e-12 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || | ||||| || || || ||||| || ||||| ||||| || || ||||||| Sbjct 11340206 ATGCCGTGGTCACTGTACCGGCCTACTTTAACGACTCTCAGCGTCAGGCTACCAAAGATG 11340147 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | |||| ||||| || || ||||| | | || || ||||| ||||| || || || Sbjct 11340146 CTGGAACCATTGCTGGCCTCAATGTGCTGAGAATCATCAATGAGCCAACTGCTGCTGCTA 11340087 Query 474855 TTGCTTATGGTCTTGATAAGAA 474876 ||||||||||| | || || || Sbjct 11340086 TTGCTTATGGTTTAGACAAAAA 11340065 >seq85 Length=6926877 Score = 96.9 bits (106), Expect = 2e-14 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 |||||| || || || || ||||| || || | || || ||||||||||| || ||||| Sbjct 1866229 ATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTT 1866170 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 |||||| |||||| |||||| ||||| || || || | |||||||||||| Sbjct 1866169 GTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAAT 1866110 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| | ||||| ||||| || || Sbjct 1866109 GGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 1866077 Score = 86.0 bits (94), Expect = 4e-11 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 ||||| || || || || ||||| || | | || || |||||||| || ||||||||| Sbjct 1866456 TCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTG 1866397 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 ||||| |||||| |||||| ||||| || || || | ||||||||| || Sbjct 1866396 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATG 1866337 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || |||||||| | ||||| ||||| || || Sbjct 1866336 GTCTTACCGGTCAAGGTCTTCACGAAGATCTG 1866305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268078311308096