Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq7 379 2e-100 seq26 318 7e-82 >seq7 Length=94539749 Score = 379 bits (420), Expect = 2e-100 Identities = 679/986 (69%), Gaps = 13/986 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 ||| || || |||| ||| |||| || || | |||||| || |||| || || || || Sbjct 16481900 CAGGTGCTCATCCAAACACTGGAGAGCAAAGAGGTCAACATCCACGTCAAACTTGTTGGC 16481959 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || |||| ||||||| || ||| || ||||| || || || || Sbjct 16481960 AAACAAGTGGTGC---TTGCGTAGCATCCAGTTCAAGTCCCCTGACCCAAAAACACACAC 16482016 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 ||| || | ||| ||||| |||| |||||||| | || || || | || || ||||| Sbjct 16482017 GGAGCGCACGTGGACGCCACTGCAGGGCGGGTAGGGGGCGCCCTTGGAAACATCGCCTTC 16482076 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||| ||||| || |||||||| | | |||||||||||| || |||||||| || || Sbjct 16482077 ATAGTAGTGCCATTTGACAAACCTCACAACCGCCTGCATGTCAGATGTGTCGTACTTATA 16482136 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| ||| | ||||| || || | || || | || | ||||||||| || | ||| Sbjct 16482137 GCTCAAGGGCAGTGCACCAGGGACTTCAGGGATCCTTTGAATGGTGGCCCAGAGATATTC 16482196 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAA--CCTGTCCCGC 160409 ||||||||||| ||||| || | ||| || || |||| | |||| | | | | Sbjct 16482197 ATCGGGGCTGTAGGTGTCTTTTGCCCACTCTATAAACTTTTGGATTTTTTCATTTTCT-- 16482254 Query 160410 AGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGT 160469 || || | | || ||| || | || ||||| || || ||||| ||||| || ||| Sbjct 16482255 AGCACATAACCCACATAGTTCCTACTGACCACAAAATAGGCACTGCCTGAGAAAATGGGT 16482314 Query 160470 ATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGC 160529 | | ||| || |||| || || ||||| | | | || | | | Sbjct 16482315 GTTTCGAGAGGAGGATGCACTTTATCTGCCCCAGTGTTTGTTAGCTTCCCATCAATGACT 16482374 Query 160530 GCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTG 160589 | | ||||| |||||||| ||| ||||| |||||||| || || || || || Sbjct 16482375 TCATAACGCTTTTTCCACCTTTCCACTTTGTGGGGTGGCATTTTCTCAGTTTCGAGGTTG 16482434 Query 160590 TTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAG 160649 || |||| || || || |||| | |||| || || || || || || | ||||| Sbjct 16482435 TTTTCACCCATGAATGACTTGAGCTTCCTGACAATTTCCAGATTGGTTTTAATAGGAAAA 16482494 Query 160650 TCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTC 160709 || |||| || | ||||||| ||||||||| | ||| |||| || |||||| || Sbjct 16482495 TCCATACCACAAAGATTTATCAAGTACTTCCAGTCCGCACTCATTCTGTAGAGGTCCTTC 16482554 Query 160710 ATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTA 160769 ||||| || | |||||||| || |||||||| ||||| || || || |||| || | Sbjct 16482555 ATGCAGTTGAGGTCTGCCTGGACCCGGCTCCATGAAGCATAGACCACACTCTCCAGCTGG 16482614 Query 160770 CTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCG---CCAGAAAGAAC 160826 |||||||||||||||||| ||||| ||| | || |||| ||| | | | |||| | Sbjct 16482615 CTGGCCACAAAGACGTTACTAAAACAGGACGCAATGCCCATCACTGCACCTAAAAAGGA- 16482673 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 ||| || | |||| ||||||||| | ||||| | ||||||||| | ||||||||| Sbjct 16482674 ATC--CTCAGACTTTTTGTCCACGTGAATACAATAGAAATTCTGAGGCACATAGATGGCC 16482731 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || || | ||| |||| ||| || || || || || | || ||||| || || || ||| Sbjct 16482732 CTCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACTACTATAGAATATGCAATTGGA 16482791 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || || |||| | || | || || || ||||||| ||| | Sbjct 16482792 AACTCTGCCTCTTCTTTGCTAAGGGTATCTGTGATATATTTGTGCCTCTTGATGAAAGAT 16482851 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 |||||| | |||||||| ||||| Sbjct 16482852 GTACAATCACTGGTCATGTTTATATA 16482877 >seq26 Length=35432990 Score = 318 bits (352), Expect = 7e-82 Identities = 266/326 (82%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 168150 TATAGAGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCAC 168209 || || || | ||| ||||||||||| ||||| || ||||| || || |||||||| ||| Sbjct 34501574 TAGAGGGTGAGGCAGGTTTTTCCAGAGATCTTTCCAGATCCAAAGGTATTGAAGAGACAC 34501633 Query 168210 ATGAAGCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGG 168269 |||||||| ||||| |||||||||||||||||||| || ||||| |||||||||||||| Sbjct 34501634 ATGAAGCACCCTTCATCCTCCACGGTGGTATTCCAGAAGGTTAGGGTTGAGTTTCGGAGC 34501693 Query 168270 CCCAACTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTC 168329 |||| ||| || |||||||| | || ||||| ||||| ||||||||||| || |||||| Sbjct 34501694 CCCAGCTGTGTGATGTTCACCCTGTCCTTATAGGGAGGCTGAACTACAACCCCATGGTTC 34501753 Query 168330 TCGCTGAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATC 168389 |||||||||||||||||||| || ||||| || |||||||| |||||||| || || ||| Sbjct 34501754 TCGCTGAAGGTGGCCATGTTTTCTGGGCTTGTAGCCTTTATTTTCTGCCATGTCACAATC 34501813 Query 168390 AGAACCTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCT 168449 | || || || || || ||||| || ||||| | ||||| |||||||||||||| ||| Sbjct 34501814 AAGACTTCCTTGTCAGTTTGCAGAGAGCATCTTAAGGAAGCGGGAGTGTTCAGCAGCTCT 34501873 Query 168450 CGCTCATCTTGAGTTACGACCTGTCC 168475 ||||| || || || || || || Sbjct 34501874 ATTTCATCCTGGGTCACCACTTGCCC 34501899 Score = 203 bits (224), Expect = 4e-47 Identities = 214/279 (77%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 167871 CCATTGCTAAGCGTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATC 167930 || ||||| | ||||||| ||||| || ||||| ||||| || || |||||||| ||| Sbjct 34498983 CCTTTGCTCACGGTTTGCCTGATGTCAGTCACAGTCCCCAAGTGCAGCACCTTGCAGATC 34499042 Query 167931 ACCTCTCCGTTTCCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTT 167990 ||||| |||| || || |||||||| || ||||| || || | ||||| || ||| Sbjct 34499043 ACCTCCTCGTTCCCCACCTGACTCTTGGGGTCTTTGACCTGCAGGATGCTGGTGACAGAC 34499102 Query 167991 GTAGTTCCATTGCGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACC 168050 || || |||||||| ||||| || || || || ||||||||||| || || || |||||| Sbjct 34499103 GTGGTCCCATTGCGGTGTAAGACAGTCTTGGTACTGTTCTCAATTCCGGACCCAGCCACC 34499162 Query 168051 TTCCAGAATATTACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTAAGCCATTG 168110 |||||||| || ||||| || || || || || ||||| ||||| ||||||||||| || Sbjct 34499163 TTCCAGAAGATCACAGGGGCTGGGCGGGCAGTGGCAGAACAGGTGATATTTAAGCC-TTC 34499221 Query 168111 GTAAAAG-ACTCGATGTGAAGCGATACGGTAGGTGGGAC 168148 | |||| | ||| |||||| ||||| || || || || Sbjct 34499222 TTCAAAGAATTCGTAGTGAAGGGATACTGTGGGCGGCAC 34499260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577202229755520