Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq93 86.0 1e-11 seq35 86.0 1e-11 >seq93 Length=5582385 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| |||| ||||| ||||| |||| || | |||||| || || ||||| || Sbjct 4490372 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 4490431 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | || || || ||||| || | ||||| || |||||||| Sbjct 4490432 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4490491 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||||||||| || || |||| || | ||| || || || | ||| ||| Sbjct 4490492 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 4490551 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || ||||| Sbjct 4490552 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 >seq35 Length=26798961 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGG--TTTTTATATTTAAAATAGTAT 193299 ||||||||||| |||||||| || || || || |||| ||| ||||||| || ||| Sbjct 10052193 TGATCAGGAGGAATTCCTTCCTTTTCCTGGATCTTGGCCTTTATATATTTTCTATTGTAG 10052134 Query 193300 CGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCA 193359 | | | ||| | || ||||| || || || ||| |||| ||||||||||| || |||| Sbjct 10052133 CCAAGGTTTCATCCTCGAGAGTGATGGTCTTCCCTATTAGGGTTTTTACAAAAATCTGCA 10052074 Query 193360 TTTT 193363 |||| Sbjct 10052073 TTTT 10052070 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899627950160640