Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq85 102 2e-16 seq72 98.7 2e-15 >seq85 Length=6926877 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | || | ||| | ||| || ||| || || ||| Sbjct 1866075 ATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCA 1866016 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||| ||||| || |||||||| | ||||| || ||||| Sbjct 1866015 GACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 1865956 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || ||||| || | || | ||| Sbjct 1865955 GGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCT 1865896 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || ||||||||||| ||||| ||||| | ||| ||||||||| Sbjct 1865895 ACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 >seq72 Length=11040415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || ||||| || || | | |||| |||| |||||| ||||||||||| | || | Sbjct 6999997 ATGTTGTAGTCAGACAAGGTGCCTCCATCTTCCAGTTGTTTGCCAGCAAAGATCAGTCCC 7000056 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || ||||| || |||||||| ||||| | || || |||||||| ||| | | Sbjct 7000057 TGCTGGTCAGGAGGAATTCCTTCCTTATCCCGAATCTTGGCCTTTACATTTTCTATTGTA 7000116 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGT-TTTACCAGTTAATGTTTTAATAAATATCTG 192533 | || | ||| | || ||||| ||||| ||| ||| ||| || || || | ||||| Sbjct 7000117 TTCGAGGGTTCAATTTTGAGAGTGATGGTCTTTTCCA-TTAGGGTATTTATGACAATCTG 7000175 Query 192534 CATTTT 192539 |||||| Sbjct 7000176 CATTTT 7000181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984450332695200