Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq72 98.7 2e-15 seq85 89.7 9e-13 >seq72 Length=11040415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 171878 CTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAA 171937 |||||| ||| || || || || || | | | | || |||| |||||| |||||||| Sbjct 6999987 CTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTCCAGTTGTTTGCCAGCAAA 7000046 Query 171938 AATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATT 171997 || | || ||| |||||||| || |||||||| ||||| | || || |||||||| Sbjct 7000047 GATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATCCCGAATCTTGGCCTTTACATT 7000106 Query 171998 AGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT-TTTACCAGTTAATGTTTTAA 172056 ||| |||| || | ||| | || ||||| ||||| ||| ||| ||| || || | Sbjct 7000107 TTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGGTCTTTTCCA-TTAGGGTATTTA 7000165 Query 172057 TGAATATCTGCATTTT 172072 ||| ||||||||||| Sbjct 7000166 TGACAATCTGCATTTT 7000181 >seq85 Length=6926877 Score = 89.7 bits (98), Expect = 9e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 171909 CGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCT 171968 ||| |||| |||| ||||| || ||||| || | ||||| |||||||| || || ||| Sbjct 1866006 CGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1865947 Query 171969 TCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGA 172028 || || ||||| || || || ||||| || || || | ||||| || || Sbjct 1865946 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGG 1865887 Query 172029 GTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || ||||||||||| ||||| ||||| | || ||||||||| Sbjct 1865886 GTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905109389001600