Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq85 129 4e-25 seq93 116 2e-21 seq54 98.7 6e-16 >seq85 Length=6926877 Score = 129 bits (142), Expect = 4e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||||||| || | ||| ||| ||||| ||||| ||||| || Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || |||| ||||| || || ||||| ||||||| | |||||||| | || Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || ||| ||||| || || || | || ||| ||| | Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCTA 1866807 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | |||| ||| |||||||| || || | |||||| || ||||||||||| Sbjct 1866806 CCTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 1866758 Score = 127 bits (140), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | || |||||||| | ||| ||||||||| ||||| ||||| | Sbjct 1866074 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866015 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || | || ||||| || || ||||| |||||||| | |||||||| | | Sbjct 1866014 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 1865955 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| ||||| || || || | ||| ||| ||| Sbjct 1865954 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTC 1865897 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| ||||| || ||||| | ||| || |||||||||||||| Sbjct 1865896 TACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 1865846 Score = 123 bits (136), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | || |||||||| | ||| ||||||||| ||||| ||||| | Sbjct 1866302 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866243 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | | | || |||| ||||| || || ||||| |||||||| | |||||||| | | Sbjct 1866242 ACAAAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 1866183 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | ||||||||||| | || ||| ||||| || || || | || ||| ||| Sbjct 1866182 GAATGCCCTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTC 1866125 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| |||||||| || || | |||||| || ||||||||||| Sbjct 1866124 TACTTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866074 Score = 118 bits (130), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | || |||||||| | ||| ||||||||| ||||| ||||| | Sbjct 1866530 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866471 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | ||| | || | || ||||| || || ||||| ||||||| | |||||||| | | Sbjct 1866470 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 1866411 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| ||||| || || || | || ||| ||| Sbjct 1866410 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTC 1866353 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| |||||||| || || | |||||| || ||||||||||| Sbjct 1866352 TACTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866302 Score = 118 bits (130), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34749 TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCG 34808 |||| || |||| | ||||||||||| | ||| ||| ||||| ||||| ||||| | Sbjct 1866758 TTCCCCCTCTCAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 1866699 Query 34809 ATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG 34868 | || | || |||| ||||| || || ||||| ||||||| | |||||||| | | Sbjct 1866698 ACAGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 1866639 Query 34869 GCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTC 34926 | | || |||||||| | || ||| ||||| || || || | || ||| ||| Sbjct 1866638 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTC 1866581 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || |||| ||| || ||||| || || | |||||| |||||||||||||| Sbjct 1866580 TACTTCAAGGGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1866530 >seq93 Length=5582385 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||||||||| ||||| ||||| || Sbjct 4490828 CCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4490887 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 4490888 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4490947 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | ||| ||| ||| || Sbjct 4490948 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 4491007 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 4491008 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 4490600 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 4490659 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 4490660 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4490719 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | ||| ||| ||| || Sbjct 4490720 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 4490779 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 4490780 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| ||| ||||| ||||| ||||| || Sbjct 4490372 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 4490431 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 4490432 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4490491 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || || || || | || || || || || || || | ||| ||| ||| | Sbjct 4490492 ATGCCTTCTTTATCCTGGATCTTGGCCTTCAC--ATTCTCGATGGTGTCACTGGGCTCCA 4490549 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 4490550 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||||||||||| | ||| |||||||| ||||| ||||| || Sbjct 4491056 CCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAA 4491115 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || ||||| ||||| || || ||||| || | |||||||| | || Sbjct 4491116 AGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4491175 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | ||| ||| ||| || Sbjct 4491176 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 4491235 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || || ||||||||||||||||| ||||| Sbjct 4491236 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCAT 4491282 >seq54 Length=15836216 Score = 98.7 bits (108), Expect = 6e-16 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| | | |||| || ||||| |||||||| || || || |||| |||| Sbjct 984855 CAGCACCAGCTACA-GGTGGACTGTTTCTGGATGTTATACTCTGAGAGACTGCAGCCATC 984797 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCG-GCACCCCCTCCTTGT 34883 ||||| || || || || || ||||| || |||||| | | | | | |||||||||| Sbjct 984796 CTCCAGATGTTTGCCTGCAAAAATCAGACGCTGCTGGGCAGGGGAGGATGCCCTCCTTGT 984737 Query 34884 CGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 | | ||||| |||||| || || || | ||| ||| || ||| |||| ||| || Sbjct 984736 CCTGGATTTTGGTTTTGAC--ATTCTCGATGGTGTCACTGGGCTTGACCTCAAGGGTGAT 984679 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||| ||| | |||||||| | |||| ||||| Sbjct 984678 GGTCTTGCCCATCAGGGTCTTCATGTAGATTTGCAT 984643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325683464015888