Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq85 127 2e-24 seq72 104 2e-17 seq24 93.3 3e-14 >seq85 Length=6926877 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| ||| || ||||| ||||| || ||||| || || | Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | ||| |||||| | || | ||||| | ||||| Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACC 1866805 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || || || ||||| ||||| || || || ||||||||| Sbjct 1866804 TCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || |||| || || ||||| || || || ||||| || || | Sbjct 1866073 TCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1866014 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || || || ||||| || ||| | |||| || ||||| || || || Sbjct 1866013 CAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1865954 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| |||||| | || | |||||| | ||||| Sbjct 1865953 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTAC 1865894 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 ||||| || || ||||| || ||||||||||| ||||| ||||||||| Sbjct 1865893 CTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || |||| || || ||||| ||||| || ||||| || || | Sbjct 1866757 TCCCCCTCTCAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 1866698 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || ||||| || ||| | ||||| || ||||| || || || Sbjct 1866697 CAGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 1866638 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| |||||| | || | ||||| | ||||| Sbjct 1866637 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 1866578 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || ||||| ||||| || ||||| ||||||||| Sbjct 1866577 TTCAAGGGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || |||| || || ||||| || || || ||||| || || | Sbjct 1866301 TCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1866242 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || ||||| || ||| | |||| || ||||| || || || Sbjct 1866241 CAAAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGG 1866182 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| |||||||| | ||| |||||| | || | ||||| | ||||| Sbjct 1866181 AATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 1866122 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || || || ||||| || || || ||||||||| Sbjct 1866121 TTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| || |||| ||| || |||| || || ||||| || || || ||||| || || | Sbjct 1866529 TCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1866470 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| || || || || ||||| || ||| | ||||| || ||||| || || || Sbjct 1866469 CAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGG 1866410 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || |||||||| | ||| |||||| | || | ||||| | ||||| Sbjct 1866409 GATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTAC 1866350 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| || || || || || || ||||| || || || ||||||||| Sbjct 1866349 TTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 >seq72 Length=11040415 Score = 104 bits (114), Expect = 2e-17 Identities = 157/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | ||||||||| || |||||||||||||| || || | | ||||| ||| Sbjct 6999966 CAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATC 7000025 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||||||||||||| | |||| || ||||| || || ||||| || || || || Sbjct 7000026 TTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATC 7000085 Query 29694 TTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | ||| || | || ||| |||||| || | || |||| | || ||||| || | Sbjct 7000086 CCG-AATCTTGGCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGG 7000144 Query 29753 T-TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | ||| ||| ||| ||| || | | ||||||||||| Sbjct 7000145 TCTTTTCCA-TTAGGGTATTTATGACAATCTGCATTTT 7000181 >seq24 Length=42784276 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/228 (69%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 |||||| | || | ||| |||| || || ||||| ||||| || ||||| || || | Sbjct 24274774 CCTCCCTTTAAGCACAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 24274715 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | || || || ||||| | |||| | || || || |||| || | || Sbjct 24274714 AGGGTATGTCCATATTCCAGCTGTTTCCTAGCAAAGATGAACCTCTGCTC-TCAAGAGGG 24274656 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || | |||||| | ||| |||||| | || |||||| |||||||| Sbjct 24274655 ATGCCTTCCTCGTCTTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGTTCTACT 24274596 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 |||||| | || || || ||||| ||||| || || || ||||||||| Sbjct 24274595 TCAAGAATGATTGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385208157691632