Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq5 132 4e-26 seq21 96.9 3e-15 >seq5 Length=100893473 Score = 132 bits (146), Expect = 4e-26 Identities = 675/1065 (63%), Gaps = 47/1065 (4%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| || |||||| | || || ||| |||| | || ||| | || | Sbjct 99801866 ATGCCTTCTATGTTGCGGACCTTGGACACATCCTGAAGAAACATCTGAGGTGGTTAAAAG 99801807 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCAGAACGACGAGAGAGTCCTC- 20323 || | ||| | |||| || ||||| || || || || ||| |||| | | Sbjct 99801806 CTCTTCCTCATGTCACCCCCTTTTATGCAGTCAAATGT---AATGACAGCAGAGCCATAG 99801750 Query 20324 --AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGT 20381 | ||| || |||||| || ||| || ||||||||||| || ||| || | |||| Sbjct 99801749 TGAGGACTCTGGCTGCCATTGGAACAGGATTTGACTGTGCTAGCAAGACTGAAAAACAGT 99801690 Query 20382 TACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGC 20441 |||| | ||| | || | |||| || ||| | | ||| ||||||||||| || Sbjct 99801689 CGGTGCAGAGTCTCAGTGTGCCTCCAGAGAGAATAATCTATGCAAATCCTTGTAAACAAG 99801630 Query 20442 CTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAG 20501 || || || | ||||| || | |||||| | |||||| ||||||||| || | Sbjct 99801629 TATCTCAAATTAAATATGCTGCCAGTAATGGAGTTCAGATGATGA-TTTTGATAGCGAGG 99801571 Query 20502 AAGAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAG 20561 ||| | | ||| || | || | | || ||| |||| || ||||| Sbjct 99801570 TGGAGTTGATGAAAGCTGCCAGGGCACATCCAAAGGCAAAGTTGGTTTTGCGGATTGCCA 99801511 Query 20562 TGGATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCA 20621 ||||| || || ||| | | |||||||| || ||||| || | | || | | Sbjct 99801510 CTGATGATTCCAAAGCAGCCTGTGGTCTGAGTGTTAAATTTGGTGCCACACTCCAAACTA 99801451 Query 20622 GCCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCC 20681 || | || || ||| || ||| | | | || || |||| |||||||||| Sbjct 99801450 GCAGGCTTCTTTTAGAACGAGCTAAAGAGCTGAATGTTGACGTCGTCGGTGTCAGCTTCC 99801391 Query 20682 ACGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGA 20741 | |||| |||||||| || || | || | | | ||||||| |||| ||| | Sbjct 99801390 ATGTGGAAAGTGGCTGTAATGACCCTGAGACCTTCGTGCAAGCCATCTCTGATGCCCGCG 99801331 Query 20742 GAGCTTTTGACTTTGGCACGCTGATG--GGCTTTGACATGTACCTCTTGGATATTGGTGG 20799 | | |||||| | || | ||| | || || |||||||||| ||||||||||| | Sbjct 99801330 GTGTCTTTGACATGGGA--GATGAGGTTGGTTTCAACATGTACCTGCTGGATATTGGTCG 99801273 Query 20800 CGGCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCAT 20856 |||||||| || ||| |||| || ||| | ||||| || || | || || Sbjct 99801272 TGGCTTTCCTGG-ATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCGTAAT 99801216 Query 20857 TAACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACC 20916 || | || ||||| | | ||||||| ||| | ||| ||| || | ||| || Sbjct 99801215 CAATCCAGCATTGGACAAGTATTTTCCGTCAGATTCTGGAGTGAAAATCATAGCTGAGCC 99801156 Query 20917 TGGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAAGTG 20976 ||||| |||| | | | || || | ||| |||| || | | | || || || || Sbjct 99801155 AGGCAGATACTGTGTTGCATCAGCTTTCACTCTAGCCGTTAATATCATCGCCAAGAAACT 99801096 Query 20977 TGTT------GAA--GACACTC-CTGGAGATAAA--------AAGT----------TTAT 21009 ||| ||| |||| | ||| ||| || |||| ||| Sbjct 99801095 TGTACTAAAGGAACAGACAGGCTCTGATGATGAAGATGGATCAAGTGAACAAACCTTTAA 99801036 Query 21010 GTATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCG 21069 ||| || | |||||||| || ||||| ||||| ||||| | | ||| || || | Sbjct 99801035 GTACTACATGAATGATGGAGTATATGGGTCATTTAATTGCATCCTTTATAATCACGCACA 99800976 Query 21070 TCCTATGCCTATGCTGCTTAA-AGAAAAACGCCTTGAAGACAAAGACTATGTTTCTAGCA 21128 | | ||| | |||| || ||| | ||| || || || ||||| ||||||| Sbjct 99800975 TGTCAAGCCCCTTCTGCAAAAGAGACCCAAGCCA-GATGAGAAGTACTATTCATCTAGCA 99800917 Query 21129 TTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAGC 21188 | ||||| || | || |||||| | ||| | |||||| || | ||||| |||||||| Sbjct 99800916 TATGGGGACCGACGTGTGATGGCCTTGATCGAATTGTTGAGTGCTGTGACCTGCCAGAAA 99800857 Query 21189 TTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 | || ||||| || ||| | | |||||||||||||| |||||| Sbjct 99800856 TGCATGTGGGTGAGTGGATGCTGTTTGAAAACATGGG-TCTTACA 99800813 >seq21 Length=46401353 Score = 96.9 bits (106), Expect = 3e-15 Identities = 120/162 (74%), Gaps = 2/162 (1%) Strand=Plus/Minus Query 21114 ACTATGTTTCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGT 21173 ||||| |||||||| |||||||| | || |||||| | ||| | || ||| |||| | Sbjct 20111718 ACTATTCATCTAGCATATGGGGGCCAACGTGTGATGGCCTTGATCGGATCGTTGAGCGCT 20111659 Query 21174 GTGAACTGCCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 |||| |||||||| | || ||||| || ||| | | |||||||||||||| ||||||| Sbjct 20111658 GTGACCTGCCAGAAATGCATGTGGGTGATTGGATGCTGTTTGAAAACATGGGTGCTTACA 20111599 Query 21234 GCTTGGTCAGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCA 21274 | | | ||| |||| || || || || |||| | |||| Sbjct 20111598 CAGTTG-CTGCTGCTTCTACTTTCAATGGGTTCCAGAGGCCA 20111558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463531971759360