Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq93 154 3e-32 seq24 140 6e-28 seq72 116 7e-21 seq1 98.7 2e-15 seq27 84.2 4e-11 >seq93 Length=5582385 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| || || || | |||||| || ||||| ||||| || || || |||| Sbjct 4491054 TACCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAG 4491113 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | |||||||| || || || || |||||||| || || || || || |||| Sbjct 4491114 AAAGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAG 4491173 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || ||||| || || || || || || || ||| | || || | Sbjct 4491174 GAATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCA 4491233 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| |||| ||||||||||| || |||||| Sbjct 4491234 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCATT 4491283 >seq24 Length=42784276 Score = 140 bits (154), Expect = 6e-28 Identities = 169/229 (74%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| | || | ||| || | ||||||||| || |||||||| || || || ||||| Sbjct 24274775 ACCTCCCTTTAAGCACAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGA 24274716 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | || | ||| || ||||| | ||||||||| | || || | || |||| Sbjct 24274715 CAGGGTATGTCCATATTCCAGCTGTTTCCTAGCAAAGATGAACCTCTGCTC-TCAAGAGG 24274657 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||||| ||||| |||||||| || ||||| ||| | || ||| | |||||||| Sbjct 24274656 GATGCCTTCCTCGTCTTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGTTCTAC 24274597 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||| | | | || ||||| || ||||| ||||| || || ||||||||| Sbjct 24274596 TTCAAGAATGATTGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 >seq72 Length=11040415 Score = 116 bits (128), Expect = 7e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || || || || ||||| || || || || ||||| | | | || ||||| |||||| Sbjct 6999976 TGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTCCAGTTGT 7000035 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || ||||||||||| |||| || || || ||||| |||||||||||||| ||||||| Sbjct 7000036 TTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATCCCGAATCTTG 7000095 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || |||| ||||| | || | ||| || ||||| | | Sbjct 7000096 GCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGGTCTTTTCCATT 7000155 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 | || |||| | ||||||||| Sbjct 7000156 AGGGTATTTATGACAATCTGCATT 7000179 >seq1 Length=129759341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 60155 TGGTGGTACTATATATCTAAAGGTATAGAATACTTAGATACGGTGTTTTTCATACTTAGG 60214 |||||||||| | |||| ||||| | ||||| || || ||||| ||||| || || ||| Sbjct 85851139 TGGTGGTACTTTGTATCAAAAGGAGTTGAATATTTGGACACGGTTTTTTTTATCCTAAGG 85851198 Query 60215 AAAAAGTTTAATCAGGTTAGTTTTTTACACGTATATCATCATTTTACTATGTTTACTTTA 60274 || || ||| || || ||| | || ||||||||||| | ||| |||||||| || Sbjct 85851199 AAGAAAAATAACCAAGTCTCTTTCCTTCATGTATATCATCACTGTACAATGTTTACATTG 85851258 Query 60275 GGATGGGTAGGCATTAAATGGTTTGCCGGAGGTCAAG 60311 | ||| | || ||||| ||| | || ||||| |||| Sbjct 85851259 TGGTGGATTGGAATTAAGTGGGTGGCAGGAGGACAAG 85851295 >seq27 Length=35828716 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || ||||| ||||| || || ||||| ||||| || || || ||| | || || || || Sbjct 23532117 CCCTCCTTGTCTTGGATTTTGGCTTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCG 23532176 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||| || ||||||||||||| ||||| ||||| |||||||| Sbjct 23532177 AGAGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 23532220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981797612637328