Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq93 136 4e-27 seq85 132 5e-26 seq3 105 6e-18 >seq93 Length=5582385 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4490629 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4490687 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||||||||| |||||||| || || |||||| || Sbjct 4490688 CTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCT 4490747 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 4490748 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 4490807 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4490808 TCTTCACGAAGATCTGCAT 4490826 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4490857 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4490915 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||||||||| |||||||| || || |||||| || Sbjct 4490916 CTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCT 4490975 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 4490976 TCACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGG 4491035 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4491036 TCTTCACGAAGATCTGCAT 4491054 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 4490401 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 4490459 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| ||||||||| ||||| |||||||| || || |||||| || Sbjct 4490460 CTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCT 4490519 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | ||||| |||||||||| || | ||||| ||| ||||| ||||| | Sbjct 4490520 TCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGG 4490579 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 4490580 TCTTCACGAAGATCTGCAT 4490598 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 133505 GTCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTT 133564 ||| || ||||||||||| || | ||||||| ||||||||||||||| |||||||| || Sbjct 4491127 GTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTT 4491186 Query 133565 GTCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || |||||| ||| | | ||| | ||||| |||||||||| || | ||||| Sbjct 4491187 ATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGAT 4491246 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| ||||| || ||||| || || ||||| Sbjct 4491247 GGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCAT 4491282 >seq85 Length=6926877 Score = 132 bits (146), Expect = 5e-26 Identities = 150/199 (75%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || || || ||| ||| || ||||| || | Sbjct 1866498 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGTCCGTCTTCCAGCTGTTTCC 1866441 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || | || ||||||||| |||||||||||||||||||| ||||||| || Sbjct 1866440 CGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCT 1866381 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| ||||||| || || | ||||| ||| || ||||||| | Sbjct 1866380 TGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTCTTACCGGTCAAGG 1866321 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 1866320 TCTTCACGAAGATCTGCAT 1866302 Score = 123 bits (136), Expect = 2e-23 Identities = 148/199 (74%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 |||||||| ||||| || ||||| || || || ||| ||| || ||||| || | Sbjct 1866042 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGT--ACGTCCGTCTTCCAGCTGTTTCC 1865985 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| |||||||||||||||||||| ||||||| || Sbjct 1865984 CGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCT 1865925 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| ||||||| || || | ||||| |||||| || || | | Sbjct 1865924 TGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTTTTACCCGTTAAGG 1865865 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || || |||||||| Sbjct 1865864 TTTTCACAAAGATCTGCAT 1865846 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || || | | | || || ||||| || || Sbjct 1866726 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGCTGTTTCCC 1866668 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 1866667 GGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 1866608 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| ||||||| || || | ||||| || || || |||| || Sbjct 1866607 GACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTCTTACCAGTCAAGGT 1866548 Query 133643 TTTTACGAAAATCTGCAT 133660 || || || |||||||| Sbjct 1866547 CTTCACAAAGATCTGCAT 1866530 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || || | | | || || ||||| || || Sbjct 1866954 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCA-TCTTCCAGCTGTTTCCC 1866896 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 1866895 GGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 1866836 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| ||||||| || || | ||| | ||| || || |||| || Sbjct 1866835 GACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGTAATGGTCTTCCCAGTCAAGGT 1866776 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 1866775 CTTCACGAAGATCTGCAT 1866758 >seq3 Length=107953029 Score = 105 bits (116), Expect = 6e-18 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || |||||||| || ||| | ||||||| ||||||||| |||||||||||||| || Sbjct 38816837 TCTTCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 38816896 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || ||||||| ||| | |||| ||||| |||| ||||| || | ||||| | Sbjct 38816897 TC-CTGATCTTAGCCTTTAAAGTCTCAGTGGTGTCACTGGGTTCCACCTCCAGGGTGATG 38816955 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| |||| || |||| ||| || ||||| Sbjct 38816956 GTCTTGCCATTCAGGGTCTTTATGAAGATTTGCAT 38816990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483406587428480