Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq26 289 3e-73 seq7 268 1e-66 seq1 131 2e-25 >seq26 Length=35432990 Score = 289 bits (320), Expect = 3e-73 Identities = 261/328 (80%), Gaps = 0/328 (0%) Strand=Plus/Plus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 ||||||| || || ||||| || || || || ||||| || ||||| ||||| || | || Sbjct 34501572 CATAGAGGGTGAGGCAGGTTTTTCCAGAGATCTTTCCAGATCCAAAGGTATTGAAGAGAC 34501631 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| || || ||||| |||||||||||||| ||||| || || | || || |||| || Sbjct 34501632 ACATGAAGCACCCTTCATCCTCCACGGTGGTATTCCAGAAGGTTAGGGTTGAGTTTCGGA 34501691 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 | || || || || |||||||||| |||||| || |||||||| || ||||| || || | Sbjct 34501692 GCCCCAGCTGTGTGATGTTCACCCTGTCCTTATAGGGAGGCTGAACTACAACCCCATGGT 34501751 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| |||||||||||||| ||||| ||||||||||| |||||||| || || | Sbjct 34501752 TCTCGCTGAAGGTGGCCATGTTTTCTGGGCTTGTAGCCTTTATTTTCTGCCATGTCACAA 34501811 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | || ||||| ||||| ||||| |||||||||||||| ||||| || ||||||| | | Sbjct 34501812 TCAAGACTTCCTTGTCAGTTTGCAGAGAGCATCTTAAGGAAGCGGGAGTGTTCAGCAGCT 34501871 Query 172071 CCCTTTCGTCTTGCGTTACCACCTGTCC 172098 | |||| || || || ||||| || || Sbjct 34501872 CTATTTCATCCTGGGTCACCACTTGCCC 34501899 Score = 206 bits (228), Expect = 3e-48 Identities = 207/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| |||||||| || |||||||||||||| | || ||||| |||||||||||| Sbjct 34498992 ACGGTTTGCCTGATGTCAGTCACAGTCCCCAAGTGCAGCACCTTGCAGATCACCTCCTCG 34499051 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 || ||||| ||||| || || ||||| || || || ||||| || ||||| || ||||| Sbjct 34499052 TTCCCCACCTGACTCTTGGGGTCTTTGACCTGCAGGATGCTGGTGACAGACGTGGTCCCA 34499111 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || || |||| || || || ||||| || || |||||||| || || || ||||| || Sbjct 34499112 TTGCGGTGTAAGACAGTCTTGGTACTGTTCTCAATTCCGGACCCAGCCACCTTCCAGAAG 34499171 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || ||||| ||||| | ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 34499172 ATCACAGGGGCTGGGCGGGCAGTGGCAGAACAGGTGATATTTAAGCCTTCTTCAAAGAAT 34499231 Query 171743 TCATAGTGTAATGACACAGTAGGTGGAAC 171771 || ||||| | || || || || || || Sbjct 34499232 TCGTAGTGAAGGGATACTGTGGGCGGCAC 34499260 >seq7 Length=94539749 Score = 268 bits (296), Expect = 1e-66 Identities = 620/930 (67%), Gaps = 7/930 (1%) Strand=Plus/Plus Query 162056 GCACCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTT 162115 || |||| | ||||| | || | ||| || | |||||||| || || | ||| | Sbjct 16481881 GCTCCAGAGCTTTATGCCTCAGGTGCTCATCCAAACACTGGAGAGCAAAGAGGTCAACAT 16481940 Query 162116 CCTCATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCC 162175 || | || |||||||| || |||| ||| ||| | | | | ||||| || | |||| Sbjct 16481941 CCACGTCAAACTTGTTGGCAAACAAGTGGTGCTTG--CGT-AGCATCCAGTTCAAGTCCC 16481997 Query 162176 CCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCC 162235 | || || || || |||||||| |||||||| ||||| ||||| ||||| || |||| | Sbjct 16481998 CTGACCCAAAAACACACACGGAGCGCACGTGGACGCCACTGCAGGGCGGGTAGGGGGCGC 16482057 Query 162236 CATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGT 162295 | | | ||||| || || ||||| ||||| || || ||||| | |||||||||| Sbjct 16482058 CCTTGGAAACATCGCCTTCATAGTAGTGCCATTTGACAAACCTCACAACCGCCTGCATGT 16482117 Query 162296 CGGAGGTGTCGTACTTGTACACTGACGGCACGGCTCCAGGAACACCCGGCAGTCTCTGTA 162355 | || ||||||||||| || | |||| || ||||| || | || | || || | Sbjct 16482118 CAGATGTGTCGTACTTATAGCTCAAGGGCAGTGCACCAGGGACTTCAGGGATCCTTTGAA 16482177 Query 162356 GAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCC 162415 || ||||| || | ||| || || || || || || || | |||||| || |||| Sbjct 16482178 TGGTGGCCCAGAGATATTCATCGGGGCTGTAGGTGTCTTTTGCCCACTCTATAAACTTTT 16482237 Query 162416 TGACCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGC 162475 || ||| || | ||| | ||| || ||| ||| | || | ||| || || | Sbjct 16482238 GGATTTTTTCATTTTCTAGCACATAACCCACATAGTTCCTACTGACCACAAAATAGGCAC 16482297 Query 162476 TACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTA 162535 | || || || | |||| | | |||||| || |||| ||| || ||||| || Sbjct 16482298 TGCCTGAGAAAATGGGTGTTTCGAGAGGAGGATGCACTTTATCTGCCCCAGTGTTTGTTA 16482357 Query 162536 CCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACGGGT 162595 | | || || | ||| | | | ||| ||||||| ||| || || | | | Sbjct 16482358 GCTTCCCATCAATGACTTCATAACGCTTTTTCCACCTTTCCACTTTGTGGGGTGGCATTT 16482417 Query 162596 GTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGAT 162655 || || || || |||| |||| || | ||| |||| | || || || |||| Sbjct 16482418 TCTCAGTTTCGAGGTTGTTTTCACCCATGAATGACTTGAGCTTCCTGACAATTTCCAGAT 16482477 Query 162656 TGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGA 162715 |||| |||| ||||| || | || || ||||| || | || ||||| | | || | Sbjct 16482478 TGGTTTTAATAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTCCGCACTCA 16482537 Query 162716 GTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACA 162775 || ||| || |||| | ||||| || || |||||||| || ||||| || || || | Sbjct 16482538 TTCTGTAGAGGTCCTTCATGCAGTTGAGGTCTGCCTGGACCCGGCTCCATGAAGCATAGA 16482597 Query 162776 CGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCA 162835 | || ||||||| | |||| |||||||| || ||||| || | || ||||||| Sbjct 16482598 CCACACTCTCCAGCTGGCTGGCCACAAAGACGTTACTAAAACAGGACGCAATGCCCATCA 16482657 Query 162836 CGGCCAGTGAGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTG 162893 | || | | || ||| || | || | || ||||| | || || | |||||| Sbjct 16482658 CTGCACCTAAAAAGGAATC--CTCAGACTTTTTGTCCACGTGAATACAATAGAAATTCTG 16482715 Query 162894 AGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGAT 162953 ||| | |||||||||||||| | || |||| ||| || || || ||||| || || || Sbjct 16482716 AGGCACATAGATGGCCCTCAGGAGCCTGTCGAGCATTTCAATTTTGTGGTGAACTACTAT 16482775 Query 162954 AGAATACGCTATGGGGAACTCAGCCTCCTC 162983 |||||| || || || ||||| ||||| || Sbjct 16482776 AGAATATGCAATTGGAAACTCTGCCTCTTC 16482805 >seq1 Length=129759341 Score = 131 bits (144), Expect = 2e-25 Identities = 386/584 (66%), Gaps = 17/584 (3%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| || | | || |||| | | Sbjct 68620341 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCAACTTCCTTCAGGTACCTTG 68620400 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | |||| Sbjct 68620401 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATATAAT 68620460 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | ||||| || || || |||| || || || | ||||| | || |||| || || Sbjct 68620461 TCTCGTAGTTTTCCCTAGATGGCCCCAGCACAACAGGTACAGAGCCAGCCAGAAAAGCAT 68620520 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || || |||| | ||||| ||||| | ||||| |||| Sbjct 68620521 TGTAGAGCTTTTCAGTGATGTAATCTTTGTGAATTGAGTTTTCAAAGGAAAGATAAAATT 68620580 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 | || | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 68620581 TGCAAGTAGATATGGTA--GGAATCAAATTTTTATCATTCACATACTCTCCAAATGCTTG 68620638 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || || || ||| || || || ||| | | Sbjct 68620639 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGTTCATTGTAATA-CTTGACTCTGGCAT 68620697 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || ||||| || || ||||| |||||||| || || Sbjct 68620698 GCTCAGGGTTCCAGTTACTTACAACCCAACACACCAACTT-CTCTTTGCTTGGCAC---- 68620752 Query 177303 TTCGATACTAATGCAGTGTCT-CTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || | || | | || | ||| | | ||||| ||||| || ||||| || Sbjct 68620753 TTCAAACACAAAGGGGTTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 68620812 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGG 177419 ||| || | ||| || | || || ||||| |||| || |||| || |||| ||| Sbjct 68620813 GTCACGGCGGTAAGTCAGAGTCAGGTTGAATAGGTGCTCGATACCACTCTTTTG--GGGA 68620870 Query 177420 CTGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAA 177463 ||| | | || ||||| || |||||||| ||||| || || || Sbjct 68620871 GTGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAA 68620914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578414994099200