Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq85 100 7e-16 seq93 98.7 2e-15 seq72 98.7 2e-15 >seq85 Length=6926877 Score = 100 bits (110), Expect = 7e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || || || ||| || ||| || || || ||||| Sbjct 1866149 GTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCAGCAGAGGCTGATCTTT 1866208 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| ||||||||||| | |||||| | || |||||| ||||||| ||||| Sbjct 1866209 GCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAACATCCAGAAGGAGTCC 1866268 Query 206365 ACTCTTCACCTTGTT 206379 ||||| ||||| ||| Sbjct 1866269 ACTCTGCACCTGGTT 1866283 Score = 93.3 bits (102), Expect = 1e-13 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 204763 AACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTC 204822 ||| ||||| ||||| ||||| ||||||| || ||||||| |||||| | ||||||||| Sbjct 1866283 AACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTC 1866224 Query 204823 CAGCTGCTTTCCGGCGAAGATAAGCC 204848 |||||| || ||||| ||||| |||| Sbjct 1866223 CAGCTGTTTCCCGGCAAAGATCAGCC 1866198 Score = 93.3 bits (102), Expect = 1e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || || ||| || || | ||||| Sbjct 1866605 GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTT 1866664 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| ||||||||||| | ||| || | || |||||| ||||||||||||| Sbjct 1866665 GCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCC 1866724 Query 206365 ACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 1866725 ACTCTGCACCTGGT 1866738 Score = 89.7 bits (98), Expect = 1e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| || || ||| || || | ||||| Sbjct 1866833 GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGCAGAGGTTGATCTTT 1866892 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| ||||||||||| | ||| || | || |||||| ||||||||||||| Sbjct 1866893 GCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAACATCCAGAAAGAGTCC 1866952 Query 206365 ACTCTTCACCTTGT 206378 ||||| || || || Sbjct 1866953 ACTCTGCATCTGGT 1866966 Score = 86.0 bits (94), Expect = 1e-11 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||||||||||| || ||||||| || ||| | |||||||||| Sbjct 1866738 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCC 1866679 Query 204824 AGCTGCTTTCCGGCGAAGAT 204843 ||||| || ||||| ||||| Sbjct 1866678 AGCTGTTTCCCGGCAAAGAT 1866659 >seq93 Length=5582385 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||||||||| |||||| |||| Sbjct 4490583 AAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGAGCCCAGTGACACCATCGAGAAT 4490524 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 4490523 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGCAGAGGCTCATCTTT 4490464 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4490463 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 4490404 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4490403 ACCCTGCACCTGGT 4490390 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| |||| ||||| |||||| | || Sbjct 4490811 AAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATTGAGAAC 4490752 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| ||| || ||| || || || ||||| Sbjct 4490751 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCAGCAGAGGCTCATCTTT 4490692 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 4490691 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 4490632 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 4490631 ACCCTGCACCTGGT 4490618 >seq72 Length=11040415 Score = 98.7 bits (108), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 206197 GGAAAA-ACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAAA 206255 |||||| || |||||| | || | ||| || | ||| | ||| |||||| || Sbjct 7000152 GGAAAAGACCATCACTCTCAAAATTGAACCCTCGAATACAATAGAAAATGTAAAGGCCAA 7000093 Query 206256 GATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCA 206315 ||||| || || ||||||||| || ||| || |||| ||||| || || || || Sbjct 7000092 GATTCGGGATAAGGAAGGAATTCCTCCTGACCAGCAGGGACTGATCTTTGCTGGCAAACA 7000033 Query 206316 GTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCT 206375 ||||||||||| | || ||| | || |||||| | || |||||||| || ||||| || Sbjct 7000032 ACTGGAAGATGGAGGCACCTTGTCTGACTACAACATTCAAAAAGAGTCAACGCTTCATCT 6999973 Query 206376 TGTTTTGAGACTTC 206389 ||| ||||| |||| Sbjct 6999972 TGTGTTGAGCCTTC 6999959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181785185830192