Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq85 93.3 4e-14 seq93 89.7 5e-13 seq80 82.4 7e-11 seq72 82.4 7e-11 >seq85 Length=6926877 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 131905 CAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACG 131964 |||||||| |||| ||| | | |||||||| || ||||||||||| || ||||| Sbjct 1866976 CAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACG 1866917 Query 131965 CGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTC 132024 |||||| |||||||| |||| | |||| | | ||| || || ||||| |||||||| Sbjct 1866916 TCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTC 1866857 Query 132025 TTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGT 132084 || || || ||| || | | || | || ||| | ||||| || || | || Sbjct 1866856 CTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGT 1866797 Query 132085 CAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | || || ||||||| || || | ||| |||||||| Sbjct 1866796 AATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 1866758 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| || ||||| |||||| |||||||| |||| | Sbjct 1866723 GACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCTTCCAGCTGTTTCCCGGCA 1866664 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 1866663 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 1866604 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| ||||| | || | || |||||||||| || || Sbjct 1866603 TTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTCTTACCAGTCAAGGTCTTC 1866544 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 1866543 ACAAAGATCTGCAT 1866530 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || ||||| |||||| |||||||| |||| | Sbjct 1866267 GACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCTTCCAGCTGTTTCCCGGCA 1866208 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| ||||| || || || || ||| || | Sbjct 1866207 AAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACA 1866148 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| ||||| | || | || ||||| |||| || || Sbjct 1866147 TTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTC 1866088 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1866087 ACGAAGATCTGCAT 1866074 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||||| |||||||| |||| | Sbjct 1866495 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCA 1866436 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || ||||| |||||||| || || || ||| || | Sbjct 1866435 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 1866376 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| ||||| | || | || ||||| |||| || || Sbjct 1866375 TTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTC 1866316 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 1866315 ACGAAGATCTGCAT 1866302 >seq93 Length=5582385 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | || || |||||| ||||| || || | | Sbjct 4490405 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 4490464 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 4490465 AAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACA 4490524 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | ||||||||||| | || | || || |||||||| || || Sbjct 4490525 TTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4490584 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 4490585 ACGAAGATCTGCAT 4490598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 |||||||| || ||||||||||| | || || |||||| ||||| || || | | Sbjct 4490633 GACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCA 4490692 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| |||||||||||||| || || |||| Sbjct 4490693 AAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCCTGGATCTTGGCCTTCACG 4490752 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || || | |||||||| || | || | || || |||||||| || || Sbjct 4490753 TTCTCAATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 4490812 Query 132110 ATGAAAATCTGCAT 132123 | ||| |||||||| Sbjct 4490813 ACGAAGATCTGCAT 4490826 >seq80 Length=8685383 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 147505 TACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTG 147564 |||| || ||||| | |||||||||||||||||| || ||||| || ||||| ||| Sbjct 8324364 TACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGGTTG 8324305 Query 147565 CTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 || || ||||| || | |||||| |||||||||| || Sbjct 8324304 CTCTTTCGATTACAGGAATCTTTGTAGAGCATGTATGG 8324267 >seq72 Length=11040415 Score = 82.4 bits (90), Expect = 7e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||||||||||||||||||||| || ||| | |||||| || ||||| || | Sbjct 6999983 TTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTCCAGTTGTTTGCCAG 7000042 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 | |||| || | ||| || || ||||| || ||||| ||||| ||| || || | Sbjct 7000043 CAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATCCCGAATCTTGGCCTTTA 7000102 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGT-TTTACCAGTCAGAGTT 132106 | ||| | |||| | || || | || || || | || ||| ||| | || || Sbjct 7000103 CATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGGTCTTTTCCA-TTAGGGTA 7000161 Query 132107 TTTATGAAAATCTGCAT 132123 ||||||| ||||||||| Sbjct 7000162 TTTATGACAATCTGCAT 7000178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476597187630720