Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq26 248 1e-60 seq5 181 1e-40 seq7 167 3e-36 seq14 150 2e-31 seq28 131 2e-25 seq13 123 3e-23 >seq26 Length=35432990 Score = 248 bits (274), Expect = 1e-60 Identities = 248/322 (77%), Gaps = 0/322 (0%) Strand=Plus/Minus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| | | |||||||||||| || || ||| | | |||||| Sbjct 34501896 CAAGTGGTGACCCAGGATGAAATAGAGCTGCTGAACACTCCCGCTTCCTTAAGATGCTCT 34501837 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| ||| |||| || ||||||| || ||||||||||| ||| | || | ||| Sbjct 34501836 CTGCAAACTGACAAGGAAGTCTTGATTGTGACATGGCAGAAAATAAAGGCTACAAGCCCA 34501777 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| || || ||| | |||| ||||| || || ||||| | ||||||||| Sbjct 34501776 GAAAACATGGCCACCTTCAGCGAGAACCATGGGGTTGTAGTTCAGCCTCCCTATAAGGAC 34501717 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 | | | |||||||| ||||| || |||| |||||||||| | || || |||||||||||| Sbjct 34501716 AGGGTGAACATCACACAGCTGGGGCTCCGAAACTCAACCCTAACCTTCTGGAATACCACC 34501657 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||||| || || ||||| || |||||||| ||||| || ||||| Sbjct 34501656 GTGGAGGATGAAGGGTGCTTCATGTGTCTCTTCAATACCTTTGGATCTGGAAAGATCTCT 34501597 Query 171369 GGGGTGGCCTGCCTCACCCTCT 171390 || ||||||||||||||| Sbjct 34501596 GGAAAAACCTGCCTCACCCTCT 34501575 Score = 165 bits (182), Expect = 1e-35 Identities = 205/280 (73%), Gaps = 3/280 (1%) Strand=Plus/Minus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 |||| |||||| || | || || || |||| ||||| || | | || ||||||||| Sbjct 34499260 GTGCCGCCCACAGTATCCCTTCACTACGAATTCTTTGAAGAAGGCTTAAATATCACCTGT 34499201 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||| ||||||||| | ||| ||| || |||||| | | ||||| | |||||| Sbjct 34499200 TCTGCCACTGCCCGCCCAGCCCCTGTGATCTTCTGGAAGGTGGCTGGGTCCGGAATTGAG 34499141 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| | || | | | || ||||| || || ||||| ||||| | || || Sbjct 34499140 AACAGTACCAAGACTGTCTTACACCGCAATGGGACCACGTCTGTCACCAGCATCCTGCAG 34499081 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAA---AGGAGGTTATCTGCCAAGTGTGGCACCTG 171629 || |||||||||||||||||| |||| | ||||||| |||||| | ||| |||| || Sbjct 34499080 GTCAAAGACCCCAAGAGTCAGGTGGGGAACGAGGAGGTGATCTGCAAGGTGCTGCACTTG 34499021 Query 171630 GGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 || | ||| ||| || | ||| |||| || ||||| |||| Sbjct 34499020 GGGACTGTGACTGACATCAGGCAAACCGTGAGCAAAGGTA 34498981 >seq5 Length=100893473 Score = 181 bits (200), Expect = 1e-40 Identities = 139/165 (84%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| || || || | ||| || | ||||||||||||||| ||||||||||| |||||||| Sbjct 90679536 CTTCAGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAA 90679595 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || ||||||||||||||||| || |||||||||||||||||||| || ||||| |||| Sbjct 90679596 AGGCACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTT 90679655 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 ||||||| |||||||| ||| |||||| || ||||||||||| Sbjct 90679656 CACCACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 90679700 >seq7 Length=94539749 Score = 167 bits (184), Expect = 3e-36 Identities = 373/557 (67%), Gaps = 15/557 (3%) Strand=Plus/Plus Query 146877 GAGCTTGGGGAAGGGTCGGGGGT-TCCTGGCCAGCTGAATTTTCAGGGGCTCCACGTGGT 146935 |||||||||||| |||| || | || ||| ||||||| |||||||||||| ||| | Sbjct 47936674 GAGCTTGGGGAAAGGTCTTGGTTCTCATGG-AAGCTGAACTTTCAGGGGCTCAGTGTGAT 47936732 Query 146936 TGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCA 146995 | ||||| | || | || ||| || || |||||||| || ||||| |||| | | Sbjct 47936733 TCAGGTAAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGA 47936792 Query 146996 CGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGA--------- 147046 ||| ||| ||||||||||||||| ||||||||| |||||||| || | Sbjct 47936793 TGTGTTCCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTC 47936852 Query 147047 CCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCA 147106 ||||| || ||||||| || || ||||||||||||||||| || |||| | || ||| Sbjct 47936853 CCCCCGGGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCA 47936912 Query 147107 CGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGT 147166 | || |||||||| | | ||||| || |||| | || | || ||||| |||| Sbjct 47936913 CCTAGAACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGAAGGTCTTTCGGGT 47936972 Query 147167 TCCAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCC 147226 |||| || | | | | ||| ||| ||||| || || || || ||||| Sbjct 47936973 TCCAAGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTT 47937032 Query 147227 ACCTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTG--TCCCGCAGTCCACGTACCTGGC 147284 ||||||||| || || ||||| || | || | | | | || | || Sbjct 47937033 TTTGCAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTC--TGC 47937090 Query 147285 CCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGA 147344 |||||| |||||||||| ||||| || ||||| || | || || | ||| || Sbjct 47937091 CCCAAAATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGA 47937150 Query 147345 GAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTT 147404 ||| ||| | | | ||| || ||| ||| | | | |||||||| ||||||||| Sbjct 47937151 GAACCCCAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTT 47937210 Query 147405 GGCGGAGAGCTCCTTAG 147421 || || || || |||| Sbjct 47937211 GGAAGACAGTTCTTTAG 47937227 >seq14 Length=62548349 Score = 150 bits (166), Expect = 2e-31 Identities = 132/167 (79%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||| ||||| ||||||||||||||||| |||||||| |||||| ||||| Sbjct 11959798 AGGGTTACCTGGGCTGCCAAGCCTTGTCAGAGATGATCAAGTTTTACCTGGAGGTGGTGA 11959739 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| || || ||| ||||| ||||| ||||||||||| || | Sbjct 11959738 TGCCGCAGGCTGAAAACCAC------------GGCCCCGACATCAAGGAGCATGTGAATT 11959691 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| | |||||| || | ||||||||||| ||| Sbjct 11959690 CCCTGGGGGAAAAGCTGACGACCCTCAGGATCAGGCTGCGGCGCTGT 11959644 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| ||||| || |||||||||||||| || || || ||||||| Sbjct 11957441 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAGTGAGTTTGACATCTTCATCAACTACA 11957382 Query 178522 TAGAAGCTTACATGACAA 178539 ||||| | |||||||||| Sbjct 11957381 TAGAATCCTACATGACAA 11957364 >seq28 Length=34889373 Score = 131 bits (144), Expect = 2e-25 Identities = 410/628 (65%), Gaps = 8/628 (1%) Strand=Plus/Plus Query 146871 AATCTTGAGCTTGGGGAAGGGTCGGGGGT-TC-CTGGCCAGCTGAATTTTCAGGGGCTCC 146928 ||| |||||||||||||| |||| || | || |||| |||| || |||||| |||| Sbjct 14578216 AATTTTGAGCTTGGGGAAAGGTCCTGGTTCTCGCTGG--AGCTAAACTTTCAGCAGCTCA 14578273 Query 146929 ACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGG 146988 ||| || ||||| | | | || || |||| || | |||||||| || ||||| ||| Sbjct 14578274 GTGTGATTCAGGTAAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGG 14578333 Query 146989 CCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACC 147048 || || | ||| || | || |||||||| | || ||||| ||| |||| || ||| Sbjct 14578334 CCCGTGATGTGTGCAATCA--CAGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACC 14578391 Query 147049 CCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTCGGCCACG 147108 ||| |||| |||| || || | || |||||||| ||| || ||| | || || | Sbjct 14578392 TCCAAGCCCCTGTCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCA 14578451 Query 147109 TAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGCGGGGTTC 147168 | |||||||| || ||||| || ||||| ||||| || ||| | | ||| Sbjct 14578452 CAGAACTGGCAAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGATTC 14578511 Query 147169 CAGGCCGAGACCACCAGCCGCCTGCTCTCGGGGTTCCTCTTAATCTCTTCGATAACCCAC 147228 || | | | | | | ||| || ||||| | || || || || || Sbjct 14578512 CAAACACACATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTT 14578571 Query 147229 CTCAGCTGGTCCACGCCCTGGCCCCCGTAGTTTGTCCCGCAG-TCCACGTACCTGGCCCC 147287 ||||||||| || || || || || | || ||| || || |||||| Sbjct 14578572 TGCAGCTGGTCTACTCCTTGACCTATATAATCTG-AATTCAGATCTTTATATTCGGCCCC 14578630 Query 147288 AAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGCGAGAA 147347 ||| ||||||||||| ||||| || ||||| || || || | | || | |||| Sbjct 14578631 AAAATGCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAG 14578690 Query 147348 GCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGC 147407 ||| | | | ||| || ||| || ||| |||||||| || |||||||| Sbjct 14578691 TCCCAGGCTGTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGA 14578750 Query 147408 GGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCC 147467 || || || |||| | ||||| || ||| | || |||| |||||||||||| | Sbjct 14578751 AGACAGTTCTTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGC 14578810 Query 147468 CCTCCAAAAGACCCTCTTGGTGGTCAGC 147495 ||| || || || |||||| ||| || Sbjct 14578811 CCTGCAGAACACAAGCTTGGTTGTCCGC 14578838 >seq13 Length=65937429 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || | ||||| ||||||| || | |||||||| Sbjct 21338439 GTACTCCTTGGTGTTTGTCATTGGCCTGGTCGGCAACATCCTGGTGGTCTTGGTCCTCAT 21338498 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 21338499 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 21338558 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 ||||| | ||||||| || ||||| |||||| ||| Sbjct 21338559 TCTGCTCTTCCTTTTCACGCTGCCCTTCTGGATTGACT 21338596 Score = 113 bits (124), Expect = 5e-20 Identities = 203/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||| || | ||||||| ||||| | | |||||| Sbjct 21281490 GTATTCCCTGGTGTTCATTGTTGGCCTGTTGGGCAATGTGGTGGTGGTGGTGATCCTCAC 21281431 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||||| || ||||||||||||| |||| ||||| |||| || ||| Sbjct 21281430 AAAATACAGGAGGCTCAGAATTATGACCAACATCTACCTGCTCAACTTGGCAATTTCTGA 21281371 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | |||| || || || ||||||||| | ||| || ||||| |||| Sbjct 21281370 CTTGCTCTTTCTAGTCACTCTTCCATTCTGGATTCAC-TATACT-GGATGGAACAAGTGG 21281313 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 || | ||| |||||||||||| | ||| ||| || ||| |||| Sbjct 21281312 GT----TTTTGGCCAATGCATGTGTAAGTTCCTCTCGGGATTTTATTACATGGGCTTGTA 21281257 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 || || || | || ||| ||||| |||| | |||||||| || || |||| Sbjct 21281256 TAGTGAGATCTTTTTCATCGTCCTGCTGACAATCGACAGGTACCTGGCCATTGT 21281203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583470845452800