Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq85 127 2e-24 seq93 102 8e-17 seq72 89.7 5e-13 >seq85 Length=6926877 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1866530 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866471 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | ||| || |||||||| || ||||| ||||| | |||||| || || | Sbjct 1866470 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 1866411 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || ||| ||||| || | |||||| | || | Sbjct 1866410 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 1866351 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||| |||||||| || || || ||||| || |||||| Sbjct 1866350 CTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 Score = 122 bits (134), Expect = 9e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 1866074 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866015 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| | ||| || |||||||| || ||||| |||| | |||||| || || | Sbjct 1866014 ACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAG 1865955 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || ||| ||||| || | ||||| | || | Sbjct 1865954 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTA 1865895 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || ||||||||||| ||||| ||||| || || || |||||| Sbjct 1865894 CCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-G 134543 |||| ||||| || || | || ||||| || ||||| ||||| || ||||||||||| | Sbjct 1866302 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 1866243 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 ||| || | || || |||||||| || ||||| |||| | |||||| || || Sbjct 1866242 ACAA-AGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGA 1866184 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || ||||| || ||| ||||| || | |||||| | || Sbjct 1866183 GGAATGCCCTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCT 1866124 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || || |||||||| |||||||| || || || ||||| || |||||| Sbjct 1866123 ACTTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| ||||| || || | || ||||| || ||||| || || || ||||||||||| Sbjct 1866758 TTCCCCCTCTCAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 1866699 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | || || |||||||| || ||||| ||||| | |||||| || || | Sbjct 1866698 ACAGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 1866639 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | |||||||| || ||||| || ||| ||||| || | |||||| | || | Sbjct 1866638 GGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTA 1866579 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 | || || || || || ||||| || || || || || || || |||||| Sbjct 1866578 CTTCAAGGGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || || || || ||||| || || || ||||||||||| Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || ||||| || ||| ||||| || | |||||| | || || Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACC 1866805 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || || |||||||| || || || || || || ||||| || |||||| Sbjct 1866804 TCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 >seq93 Length=5582385 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || |||||||| || ||||||||||| | Sbjct 4491056 CCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAA 4491115 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 4491116 AGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4491175 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | ||||| | ||||| Sbjct 4491176 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 4491235 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || || || |||||||||||| Sbjct 4491236 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTTG 4491286 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || ||||| || ||||||||||| | Sbjct 4490828 CCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 4490887 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 4490888 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4490947 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | ||||| | ||||| Sbjct 4490948 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 4491007 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 4491008 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || || || || ||||||||||| | Sbjct 4490600 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 4490659 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 4490660 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGA 4490719 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | ||||| | ||||| Sbjct 4490720 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGCTCCACC 4490779 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 4490780 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 >seq72 Length=11040415 Score = 89.7 bits (98), Expect = 5e-13 Identities = 152/218 (70%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 134501 CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTGAGAGT 134559 |||||| || || ||||| || || ||||||||||||||||| | ||| |||| | Sbjct 6999966 CAACACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAA-GGTGCCTCCAT 7000024 Query 134560 CGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTT 134619 | || || |||||||| ||||| |||| | |||||| || || || || ||||| || | Sbjct 7000025 CTTCCAGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTAT 7000084 Query 134620 CTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGG 134679 | |||| || || || || | ||| | || | ||| | | |||||| |||| Sbjct 7000085 CCCGAATCTTGGCCTTTACATTTTCTATTGTATTCGAGGGTTCAATTTTGAGAGTGATGG 7000144 Query 134680 TTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 | || | ||| || || | || ||| ||||||||| Sbjct 7000145 TCTTTTCCATTAGGGTATTTATGACAATCTGCATTTTG 7000182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505383541287040