Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_027016.1 Length=226084 Score E Sequences producing significant alignments: (Bits) Value seq17 114 2e-20 seq7 91.5 2e-13 >seq17 Length=51904812 Score = 114 bits (126), Expect = 2e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 213996 AGATTATTGACGGGGAAGTCTACCCTCCTACCGTCAAGGAGGCCCGAGTGCATATGGTTT 214055 |||| ||||| || || | || ||||| || ||||| ||| | | | | ||| | | Sbjct 13370894 AGATAATTGATGGAGAGATGTATCCTCCCACTGTCAAAGAGACTCAGGCAGAGATGATCT 13370953 Query 214056 ACGAACCCAGCGTTCCCGAAAAGTTACGTTTCGCACTGGGTAACGAGATGTTTGGACTCG 214115 || || || || ||| | | || || || |||| | ||| | ||||| || | Sbjct 13370954 ACCCGCCTCATGTCCCTGAACACCTGCGGTTTGCTGTGGGCCAGGAGGTCTTTGGGCTGG 13371013 Query 214116 TGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGAGAGAGCACAACAGGGTTTGCGACG 214175 |||| || | ||| |||| |||| |||||||| | || || |||||||| ||||||| Sbjct 13371014 TGCCTGGCCTGATGATGTATGCCACAATCTGGCTTCGGGAACATAACAGGGTGTGCGACG 13371073 Query 214176 TGCTGAAACAAGAGCACCCGGAATGGAACGACGAACAGCTGTTCCAGA 214223 |||| | ||| ||||| || |||||| ||||||| ||| ||||||||| Sbjct 13371074 TGCTTAGACAGGAGCATCCAGAATGGGACGACGAGCAGTTGTTCCAGA 13371121 >seq7 Length=94539749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 214092 TGGGTAACGAGATGTTTGGACTCGTGCCCGGTTTCATGGTGTACGCCATTATCTGGCTGA 214151 |||| | ||| |||| || || | ||||| ||||| | || |||| ||||||||| Sbjct 36663346 TGGGCCAGGAGGTGTTCGGGCTGCTTCCCGGCCTCATGCTCTATGCCACAATCTGGCTGC 36663287 Query 214152 GAGAGCACAACAGGGTTTGCGACGTGCTGAAACAAGAGCACCCGGAATGGAACGACGAAC 214211 | ||||||||| | || || ||| ||||||| |||||||| ||||||||||| | Sbjct 36663286 GTGAGCACAACCGTGTGTGTGACCTGCTGAAGGCTGAGCACCCCACCTGGAACGACGAGC 36663227 Query 214212 AGCTGTTCCAGATCACTCGTTTAATCATTA 214241 |||| ||||||| || || | ||| ||| Sbjct 36663226 AGCTCTTCCAGACGACCCGCCTCATCCTTA 36663197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723319533780480