Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq21 138 2e-27 seq80 120 4e-22 seq9 116 5e-21 >seq21 Length=46401353 Score = 138 bits (152), Expect = 2e-27 Identities = 112/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| ||||| | ||| || || || ||||| |||||||||| || || || | Sbjct 19708525 CCTCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCT 19708466 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| |||||||||||||| ||||||||||||||||| | Sbjct 19708465 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGG 19708406 Query 39759 CAACAAGTCTCTCTCC 39774 | |||| | |||||| Sbjct 19708405 CTACAACACGCTCTCC 19708390 >seq80 Length=8685383 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| |||||||| || |||||| ||| | || || || ||||| || | Sbjct 8338374 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8338315 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || ||||||||||||||||||||||| || || ||||| || | | | | | Sbjct 8338314 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTCAGTACAGTTT 8338255 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 |||||| |||||||| | |||||| ||| || || | ||||| |||| Sbjct 8338254 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 8338204 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 68947 GATCCATTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAAT 69006 || || | ||| |||||||| || || | || | || ||||||||||| || || || Sbjct 8331341 GAACCCTCATAGGTTTCATATGGGCCATGCTCCTTGGCCAGTTCACAACTGGCTTCCAAG 8331282 Query 69007 GCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCG 69066 || || |||||||| ||||| ||||| | |||||| | |||||| ||| |||| || Sbjct 8331281 GCTCCATAATAAATGGTTTCAAAAATTTGCTTATTCAATAATTGTGCCTCTGGACTCTCA 8331222 Query 69067 AATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGT 69126 || ||||| | || ||||| |||||||||| || || |||||||| || | || Sbjct 8331221 AAAGGATACCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAACGGGG 8331162 Query 69127 CTATGTCTCTTATTTGA 69143 | ||| | |||||||| Sbjct 8331161 CGATGGCGTTTATTTGA 8331145 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778 |||||||| || || || ||||| ||||| || || || ||||| || ||||| | || Sbjct 8335811 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 8335752 Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838 |||||||| ||||| || ||||||||||| ||||| ||||| || || | | |||||| Sbjct 8335751 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 8335692 Query 68839 TTTCTAAGACCAT 68851 ||||| | ||||| Sbjct 8335691 TTTCTTACACCAT 8335679 Score = 105 bits (116), Expect = 9e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390 || |||| || | ||| || ||||| ||||| || || || | || || || ||||| | Sbjct 8309061 CACCACTGAACACTTTCTTCGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 8309002 Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450 | || ||||||||||| || | ||||| | || || ||| |||| ||||| || || | Sbjct 8309001 GGATGGCATAGTCAGGGTGCTTAGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTGT 8308942 Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| ||| | ||| || || || |||||| ||||| || |||||||||| Sbjct 8308941 CTAGTTCCACAGTGGTGACCCCACTATATAAGCCTTGGATTACTTTCATGG 8308891 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| ||||||||||| || | ||| || || |||| | | | Sbjct 8323066 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAAAATAGGTCCCTGGCACGCTGT 8323007 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| ||||| ||||| || || | ||| || ||||| | || || ||||||| || Sbjct 8323006 TCTTCCTTTCCCGTATTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 8322947 Query 69715 TCTAGATATATCGC 69728 || ||||| || || Sbjct 8322946 TCCAGATAAATAGC 8322933 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566 ||||||| || ||||| ||||||||||| ||||||| |||||||||||||||||||| Sbjct 8323499 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 8323440 Query 69567 CATCAATGACCA 69578 |||||| ||||| Sbjct 8323439 CATCAAAGACCA 8323428 >seq9 Length=85640724 Score = 116 bits (128), Expect = 5e-21 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||||||||| ||||| | ||| || Sbjct 49095634 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 49095693 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| || ||||||||||| || ||||| || |||||||| || ||||| || Sbjct 49095694 AGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCT 49095753 Query 39761 AC 39762 || Sbjct 49095754 AC 49095755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686888604881280