Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq21 109 4e-19 seq32 86.0 5e-12 seq28 82.4 6e-11 seq9 82.4 6e-11 >seq21 Length=46401353 Score = 109 bits (120), Expect = 4e-19 Identities = 91/109 (83%), Gaps = 2/109 (2%) Strand=Plus/Plus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| |||||| ||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 19705528 CAAGAAGTTCAGATTACC-GAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 19705586 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 19705587 CATACATTCTGAAATGTATAGTCTCCTTATTGACACTTACATTAAAGAT 19705635 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 ||||| || |||| || ||||||| || ||||| || |||||||| || || ||||| Sbjct 19708390 GGAGAGCGTGTTGTAGCCTTTGCAGCAGTAGAAGGGATCTTCTTTTCTGGTTCTTTTGCA 19708449 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| || |||||||| | ||||| || ||||| | Sbjct 19708450 TCGATATTCTGGCTCAAGAAACGAGGATTAATGCCTGGCCTCACGTTCTCCAATGAACTT 19708509 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 19708510 ATTAGCAGAGATGA 19708523 Score = 87.8 bits (96), Expect = 1e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | ||||||||| | |||||||| ||||| ||| |||| ||||| || |||| Sbjct 19704557 TGCTGAGAGAAAATCCCCGCCGCTTTGTCGTCTTTCCTATTGAATACCATGATATTTGGC 19704616 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 | |||||||| ||||| |||| || ||||||||||| || || || Sbjct 19704617 AGATGTACAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGT 19704662 >seq32 Length=29745944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||||||||| Sbjct 26916067 AACAGTGGTTTGCACATCATCATCTTTGATGAAATCGATGCCATCTGCAAGCAAAGAGGG 26916008 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 |||| | ||||| ||||||||||||||||| || | ||||| ||| | Sbjct 26916007 AGCATGGCTGGCAGCACAGGAGTTCATGACACTGTTGTCAACCAGTTACTGTCCAAAATT 26915948 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || |||| ||||| ||| Sbjct 26915947 GATGGGGTGGAGCAACTGAACAACATCCTAGTCATTGGTATG 26915906 >seq28 Length=34889373 Score = 82.4 bits (90), Expect = 6e-11 Identities = 266/411 (65%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 40864 AAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACA 40923 |||| ||| || || |||||||| ||||||| | | |||||||| || ||||| | Sbjct 14578674 AAGGAGATTCAGGCCCAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATATAAAG 14578615 Query 40924 CTATGTACTCTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATACGA 40983 | || | || ||||||| | ||||| | || || | || | || || || | Sbjct 14578614 ATCTGAATTCAGATTATATAGGTCAAGGAGTAGACCAGCTGCAAAAGGCTACTGACACAA 14578555 Query 40984 TTAAATCCGATCCCGATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTAC 41043 | ||| || | || || | || | || | |||| | ||||| | || | | | | Sbjct 14578554 TCAAAACCAACCCTGACGACAGAAGAATCTTCATGTGTGTTTGGAATCTAAAAGGCCTTC 14578495 Query 41044 ATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTT---ACGTTTGCAATGGTG 41100 | ||||||| |||| || || ||| | || ||||| | | || || ||| Sbjct 14578494 CTCAGATGGCACTGCCTCCCTGCCATGCTCTTTGCCAGTTCTGTGAGGTGAACATTGGG- 14578436 Query 41101 AACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACA 41160 ||||| || | |||| | | ||||| |||| ||| | | ||| || || | || Sbjct 14578435 --CTGTCCTGCTAGCTGTACTAGGGTTCAGGAGACAGGGGCTTGGAGGTGCCTTTCACCA 14578378 Query 41161 TAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTG 41220 | || || ||||| |||||| | | |||||||||| | || | || || |||| Sbjct 14578377 TCGCCAGGTATGCCTGGCTCACCTGT--GATTGCACACATCACGGGCCTGAAGCCAGGTG 14578320 Query 41221 AATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGC 41271 | ||||| | || || ||||||| || |||||| | ||||||| |||| Sbjct 14578319 ACTTTGTATATACTTTGGGAGATGCACTCATTTACCTGAATCACACTGAGC 14578269 >seq9 Length=85640724 Score = 82.4 bits (90), Expect = 6e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||||| Sbjct 49076168 AAAATCCCTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAAA 49076109 Query 44553 AACGCGTT 44560 |||| ||| Sbjct 49076108 AACGAGTT 49076101 Score = 82.4 bits (90), Expect = 6e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| || || | ||| || ||| ||||||| ||| | ||||||| Sbjct 49103449 GGTTTGTCATCTTTCCAATCCAGTACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 49103390 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 49103389 CATCCTTCTGGACAGCAGAAGAGGT 49103365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397444606923760