Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_027984.1 Length=57677 Score E Sequences producing significant alignments: (Bits) Value seq21 165 3e-36 seq5 129 2e-25 seq48 113 2e-20 seq46 82.4 3e-11 >seq21 Length=46401353 Score = 165 bits (182), Expect = 3e-36 Identities = 217/279 (78%), Gaps = 20/279 (7%) Strand=Plus/Plus Query 22135 CCCTGCCACTCATCGCAGTACTGTTG-TAATTCATTAAGCATTCTGCCGACA-TGGAAGC 22192 |||| ||| |||||| |||| || || ||||||||||||||| ||||||||| || || | Sbjct 31835074 CCCTCCCATTCATCGAAGTAATGGTGGTAATTCATTAAGCATACTGCCGACATTGAAAAC 31835133 Query 22193 CATCACAAAC-GGCAT-GATGAACCTGAATCGCCAGCGGCAT-CAGCACCTTGTCG-CCT 22248 |||||||||| ||||| ||||| | || |||| |||| || ||| |||||| | ||| Sbjct 31835134 CATCACAAACGGGCATGGATGACCTGGATTCGCAAGCGTAATCCAGAACCTTGAGGCCCT 31835193 Query 22249 TGCGTATAATATTTGCCC-ATGGTG-AAAACGGGGGCGAAGAAGTTGTCCAT-ATTGGCC 22305 |||| |||| ||| |||| |||| | ||||||||||| || ||| ||| ||| |||| || Sbjct 31835194 TGCGAATAAAATTAGCCCAATGGGGAAAAACGGGGGCAAAAAAGGTGTTCATAATTGTCC 31835253 Query 22306 ACGTTTAA--ATCAAAAC--TGGTGAAACTCACCC-AGGGATT-GGCTGAGACGAAA-AA 22358 |||| ||| || ||||| | ||||||| ||| | | ||| || | |||| ||| || Sbjct 31835254 ACGTGTAAATATAAAAACCTTCTGGAAACTCGCCCAAAGTATTAGGTTAAGACAAAAGAA 31835313 Query 22359 CATATT-CTCAA-TAAACCC--TTTAGGGAAATAGGCCA 22393 | ||| ||||| | ||||| |||||| |||||||||| Sbjct 31835314 GAAATTCCTCAAGTGAACCCCTTTTAGGAAAATAGGCCA 31835352 >seq5 Length=100893473 Score = 129 bits (142), Expect = 2e-25 Identities = 117/137 (85%), Gaps = 8/137 (6%) Strand=Plus/Plus Query 22335 CCAGGGATT-GGCTGAGACGAAAAA-CATATTCTCAATAA-ACCCTTTAGGGAAA-TAGG 22390 ||||||||| ||||||||| ||||| ||||||||| || | |||||||||||||| || | Sbjct 67913189 CCAGGGATTTGGCTGAGACCAAAAAACATATTCTCTATTAGACCCTTTAGGGAAAATAAG 67913248 Query 22391 CCAGGTTTTCACCGTAACAC-GCCACATCTTGCGAATATATGTGTAGAAACTGCCGG-AA 22448 ||||| |||| ||| ||||| ||| ||||||||| |||||||| |||||||||||| || Sbjct 67913249 CCAGGGTTTCCCCGGAACACCGCCCAATCTTGCGA-TATATGTGGAGAAACTGCCGGAAA 67913307 Query 22449 ATCGTCGTGGT-ATTCA 22464 ||| || |||| ||||| Sbjct 67913308 ATCATCCTGGTAATTCA 67913324 >seq48 Length=18382006 Score = 113 bits (124), Expect = 2e-20 Identities = 127/161 (79%), Gaps = 7/161 (4%) Strand=Plus/Plus Query 22586 TCAGGCGGGCAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTCTTTACGG 22645 ||||| || | |||| | | || |||||| || | | ||| ||||||| |||||||| Sbjct 12504243 TCAGG-GGTCCAGAAGGAGCGTACAGGCCGT-TAGACCATGTACTTATTTA-CTTTACGG 12504299 Query 22646 TCTTTAAAAAGGCCGTAATATCCAGCTGAACGGTCTGGTTATAGGTACATTGAGCAACTG 22705 || |||||| ||||| || ||||||| | || ||||| || ||||||| |||| |||| Sbjct 12504300 TCATTAAAA-GGCCG-AAGATCCAGCGCACCGACCTGGTGATGGGTACATCGAGCCACTG 12504357 Query 22706 ACTGAAATGCCTCAAAATG-TTCTTTACGATGCCATTGGGA 22745 |||| |||||| ||||||| |||||||||| ||||| |||| Sbjct 12504358 ACTGGAATGCC-CAAAATGGTTCTTTACGAAGCCATCGGGA 12504397 >seq46 Length=18364239 Score = 82.4 bits (90), Expect = 3e-11 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 22416 ATCTTGCGAATATATGTGTAGAAACTGCCGGAAATCG-TCGTGGTATTCACTCCAGAGCG 22474 ||||| ||||||| || || |||||| || | || ||| |||| | ||| ||| || Sbjct 16184209 ATCTTTCGAATATGTGATGAGTAACTGCTGGGCAGCGCTCG-GGTACTGGCTCGAGAACG 16184267 Query 22475 ATGAAAACGTTTCAGTTTGCTCATGGAAAACGGTGTAACAAGGGTGAACACTATCCCATA 22534 ||||||||||| | || || | ||||||| || || ||||| ||||| || | Sbjct 16184268 ATGAAAACGTTGCGGTGTGACCGCTGAAAACGCGGTGCTGGGGCTGAACCCTATCGCAGA 16184327 Query 22535 TCACCAGCTCACCGTCTTTCATTGCCATACGGAATTCCGGATGAGCATTCATCAGGCGGG 22594 |||| | || | ||| ||||| | ||||| || ||||||| ||| |||| | Sbjct 16184328 TCACTGGTTCGAGGACTTGCATTGTCTATCGGAAGTCAGGATGAGTATTTATCACGATCT 16184387 Query 22595 CAAGAATGTGAATAAAGGCCGGATAAAACTTGTGCTTATTTTTC 22638 || || || |||||| || |||| || ||||| |||| || Sbjct 16184388 CATGATGTTGTATAAAGTCCAGATAGAAAATGTGCGAATTTATC 16184431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 184439648456736