Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq80 89.7 6e-13 seq21 86.0 7e-12 >seq80 Length=8685383 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 104904 AGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGA 104963 ||||||| || || || ||||| ||||||||||| |||||||| ||||||| | ||||| Sbjct 8324244 AGTCTCAGACAGAAACAGGTACCCCATACATGCTCTACAAAGATTCCTGTAATCGAAAGA 8324303 Query 104964 GTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAAT 105023 | || || |||| |||| |||||| | ||| || || |||||||| | || | Sbjct 8324304 GCAACCAGCAGAACCTGGGAACGATCAAATGCAGCAACCTGTGCACAGAAATAGTAGAGT 8324363 Query 105024 TTACAGACAAAGATGAG 105040 ||| |||||||||| Sbjct 8324364 ATACCAGCAAAGATGAG 8324380 >seq21 Length=46401353 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 95168 AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAA 95227 |||||||||||||||| |||||||||||| || || |||||||| ||||||||||| | Sbjct 19710001 AGAATCCATTTGACTTTATGGAGAACATTTCACTGGAAGGGAAGACTAACTTCTTCGAGA 19710060 Query 95228 AGAGGGTTGGGGACTAT 95244 |||| || || || ||| Sbjct 19710061 AGAGAGTAGGCGAGTAT 19710077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583243652132480