Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq37 104 3e-17 seq32 100 3e-16 >seq37 Length=24123610 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || ||||| || Sbjct 13850761 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCGAACTGA 13850702 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 13850701 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13850642 Query 117425 ATCGT 117429 || || Sbjct 13850641 ATAGT 13850637 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||| ||||| Sbjct 13850761 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCGAACTGA 13850702 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 13850701 CCAATAGGCTGAAGTAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 13850642 Query 152149 ATCGT 152153 || || Sbjct 13850641 ATAGT 13850637 >seq32 Length=29745944 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 22359991 GTGAAGATGTATCGAGGACTAGCTGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 22360050 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| || || ||| |||||| ||||||||||||||||| | | Sbjct 22360051 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTAATA 22360110 Query 152149 ATCGT 152153 || || Sbjct 22360111 ATGGT 22360115 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || || | ||||||||||||| || | ||||| || || Sbjct 22359991 GTGAAGATGTATCGAGGACTAGCTGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 22360050 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | || | |||||||||||| || ||| ||||||||| || |||||||| || | | Sbjct 22360051 CCAATGGGTTGCAAGAGGTTCAGATTATTGCTGCCCACAAAATTCTGAGCCAAATTAATA 22360110 Query 117425 ATCGT 117429 || || Sbjct 22360111 ATGGT 22360115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547199911849600