Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq93 150 2e-31 seq85 147 2e-30 seq54 111 2e-19 seq72 107 2e-18 seq3 102 9e-17 seq27 84.2 2e-11 seq37 82.4 9e-11 >seq93 Length=5582385 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||||||||| ||||| || || |||||||| || || || ||||| ||| | | Sbjct 4491283 AATGCAAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 4491224 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || ||||||| || || ||||| || || || |||||||| ||||| Sbjct 4491223 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCCGACCA 4491164 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || ||||| || || || | ||||| || | ||||| || Sbjct 4491163 GCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTGACTACAA 4491104 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || || || || ||| | || || | ||||| Sbjct 4491103 CATCCAGAAGGAATCGACCCTGCACCTGGTCCTTCGCCTGAGGGGTGG 4491056 >seq85 Length=6926877 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| | ||||| ||||| ||||| ||||| || ||| | | Sbjct 1866073 AATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 1866132 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||||| ||| | ||||| || || || ||||||||||| |||||||| ||||| Sbjct 1866133 CGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAGGGCATTCCTCCTGACCA 1866192 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || ||||| || || || || || |||| ||||| | | ||||| || Sbjct 1866193 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTTTGTCTGACTACAA 1866252 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| |||||||| || || || | ||||| Sbjct 1866253 CATCCAGAAGGAGTCCACTCTGCACCTGGTTCTCCGTCT 1866291 >seq54 Length=15836216 Score = 111 bits (122), Expect = 2e-19 Identities = 144/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||| | ||||| || | |||||||| || || |||||||| || | || Sbjct 984643 ATGCAAATCTACATGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTCAAGCCCAGT 984702 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTC-CTCCAGACCA 27524 || | ||| | ||| | || | ||||| |||||||||||||| || | | || | ||| Sbjct 984703 GACACCATCGAGAATGTCAAAACCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGCCCA 984762 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| |||||||| || || || || ||||||| | | || |||| ||||| Sbjct 984763 GCAGCGTCTGATTTTTGCAGGCAAACATCTGGAGGATGGCTGCAGTCTCTCAGAGTATAA 984822 Query 27585 TGTCCAAAAGGAATCCAC 27602 |||| || | ||||| Sbjct 984823 CATCCAGAAACAGTCCAC 984840 >seq72 Length=11040415 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 27477 AAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAAT 27536 |||| | ||||| || |||| ||| ||||| ||||||||||| ||||||||| | || || Sbjct 7000107 AAATGTAAAGGCCAAGATTCGGGATAAGGAAGGAATTCCTCCTGACCAGCAGGGACTGAT 7000048 Query 27537 TTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGA 27596 |||||||| || ||||| || |||| | ||| | | ||||| || | ||||| || Sbjct 7000047 CTTTGCTGGCAAACAACTGGAAGATGGAGGCACCTTGTCTGACTACAACATTCAAAAAGA 6999988 Query 27597 ATCCACTCTTCATCTAGTCTTGCGTCTTC 27625 || || |||||||| || ||| | |||| Sbjct 6999987 GTCAACGCTTCATCTTGTGTTGAGCCTTC 6999959 >seq3 Length=107953029 Score = 102 bits (112), Expect = 9e-17 Identities = 118/158 (75%), Gaps = 1/158 (1%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||||||||| | ||||| || | |||||||| || || || ||||| || | | Sbjct 38816991 AATGCAAATCTTCATAAAGACCCTGAATGGCAAGACCATCACCCTGGAGGTGGAACCCAG 38816932 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || || | ||| |||||||| | |||||| || || || || ||||| ||||| Sbjct 38816931 TGACACCACTGAGACTTTAAAGGCTAAGA-TCAGGATAAAGAAGGCATCCCTCCTGACCA 38816873 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 |||| | || || || || |||||||| || || |||| Sbjct 38816872 GCAGAGGCTCATCTTCGCAGGTAAGCAGCTGGAAGATG 38816835 >seq27 Length=35828716 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || ||||| ||||| ||| | || Sbjct 23532220 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTCGAGGTCGAGCCCAGT 23532161 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | ||| | ||| | || || ||||| || ||||||||||| Sbjct 23532160 GACACCATCGAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGG 23532117 >seq37 Length=24123610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 || ||||| || | |||||||||||||| || || ||| | |||||||| |||| Sbjct 13850637 ACTATTGTGAATTTGGCTCAGAACTTTGTGGGAAGTAACAACATTAACTTACTTCAGCCT 13850696 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| ||||| || || ||||| |||||||| |||||||| ||| | ||||| || Sbjct 13850697 ATTGGTCAGTTCGGAACTCGGCTTCATGGTGGCAAAGATGCTGCAAGCCCTCGTTATATT 13850756 Query 32245 TTCAC 32249 ||||| Sbjct 13850757 TTCAC 13850761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570293632874240