Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq7 109 7e-19 >seq7 Length=94539749 Score = 109 bits (120), Expect = 7e-19 Identities = 189/272 (69%), Gaps = 2/272 (1%) Strand=Plus/Minus Query 14277 GACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCC 14336 ||||| ||||||||||| || | || ||||||||| | || || || | | | ||| Sbjct 16482214 GACACCTACAGCCCCGATGAATATCTCTGGGCCACCATTCAAAGGATCC-CTGAAGTCCC 16482156 Query 14337 GGGGGGATCCCCGTTCACGTC-AAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTT 14395 || | | || || | | ||||||||||| || |||||| ||| || ||||| Sbjct 16482155 TGGTGCACTGCCCTTGAGCTATAAGTACGACACATCTGACATGCAGGCGGTTGTGAGGTT 16482096 Query 14396 CGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGA 14455 ||||| ||||||||||| || || ||| | || || |||| |||||||| ||| Sbjct 16482095 TGTCAAATGGCACTACTATGAAGGCGATGTTTCCAAGGGCGCCCCCTACCCGCCCTGCAG 16482036 Query 14456 CGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAG 14515 ||| ||||||| | | || | || | || ||||| || ||| |||| ||| || | Sbjct 16482035 TGGCGTCCACGTGCGCTCCGTGTGTGTTTTTGGGTCAGGGGACTTGAACTGGATGCTACG 16481976 Query 14516 CGTCCCGCACCTGTTCGCCAACAAGTTCGACG 14547 | | ||| |||| ||||||||||| |||| Sbjct 16481975 CAAGCACCACTTGTTTGCCAACAAGTTTGACG 16481944 Score = 100 bits (110), Expect = 4e-16 Identities = 241/365 (66%), Gaps = 0/365 (0%) Strand=Plus/Minus Query 13672 CCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGA 13731 |||| ||| ||||||| |||||||| || || || || || || | |||||||| | Sbjct 16482816 CCCTTAGCAAAGAAGAGGCAGAGTTTCCAATTGCATATTCTATAGTAGTTCACCACAAAA 16482757 Query 13732 TCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCC 13791 | || ||| |||| | ||||||||||||||||| | || ||||| |||| || | | Sbjct 16482756 TTGAAATGCTCGACAGGCTCCTGAGGGCCATCTATGTGCCTCAGAATTTCTATTGTATTC 16482697 Query 13792 ACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCT 13851 |||||||| ||||| | || || | | | || || ||| || || | Sbjct 16482696 ACGTGGACAAAAAGTCTGAGGATTCCTTTTTAGGTGCAGTGATGGGCATTGCGTCCTGTT 16482637 Query 13852 TCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCG 13911 | |||||| ||||| || |||| | ||||| || | || ||||| || | Sbjct 16482636 TTAGTAACGTCTTTGTGGCCAGCCAGCTGGAGAGTGTGGTCTATGCTTCATGGAGCCGGG 16482577 Query 13912 TGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACC 13971 | ||||| ||||||| ||||||| |||||| || | | |||| |||| Sbjct 16482576 TCCAGGCAGACCTCAACTGCATGAAGGACCTCTACAGAATGAGTGCGGACTGGAAGTACT 16482517 Query 13972 TGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGC 14031 || | || || || || ||||| || || | || ||||| ||||| || || || || Sbjct 16482516 TGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAATCTGGAAATTGTCAGGAAGC 16482457 Query 14032 TGAAG 14036 | ||| Sbjct 16482456 TCAAG 16482452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658719833067520