Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq7 187 2e-42 seq28 165 7e-36 seq5 150 1e-31 seq8 93.3 3e-14 >seq7 Length=94539749 Score = 187 bits (206), Expect = 2e-42 Identities = 372/549 (68%), Gaps = 13/549 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || ||||| || || | |||||| ||||| || || || || ||||| Sbjct 47936679 TGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGT 47936738 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || | |||||| | || ||||| || || || | || | ||| ||| Sbjct 47936739 AAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTT 47936798 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC---- 30013 |||||||||| ||||| || ||||||||| ||||| || || ||||| ||| Sbjct 47936799 CCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCG 47936858 Query 30014 -----ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAA 30068 ||||| || || |||||||| ||||| || || |||| | || ||| || | Sbjct 47936859 GGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCACCTAGA 47936918 Query 30069 ACTGACACATGGCGTGGCACGGAGG-AAGAGCCA-TGAGGCCCAAGTCTTTGGGGTTCCA 30126 |||| || | ||| ||||| ||||| || | || ||||| | |||||| |||||||| Sbjct 47936919 ACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGA--AGGTCTTTCGGGTTCCA 47936976 Query 30127 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 30186 || ||| || ||| | ||||| || ||||| | |||| ||| | | ||||| Sbjct 47936977 AGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTTG 47937036 Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 30246 |||||| || || || || || || |||| |||| || | | ||||| || || Sbjct 47937037 CAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAA 47937096 Query 30247 ATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 30306 ||||||||||| || || || || || || | ||||| ||||| || ||| || Sbjct 47937097 ATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCC 47937156 Query 30307 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGA 30366 | ||||||||||||||| || || ||| | ||||||||||| || ||||| ||| Sbjct 47937157 CAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTTGGAAGA 47937216 Query 30367 GAGCTCTTT 30375 || ||||| Sbjct 47937217 CAGTTCTTT 47937225 >seq28 Length=34889373 Score = 165 bits (182), Expect = 7e-36 Identities = 410/615 (67%), Gaps = 12/615 (2%) Strand=Plus/Plus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 |||| || |||| || || | || ||||| | |||||| | || || || ||||| Sbjct 14578227 TGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCTCAGTGTGATTCAGGT 14578286 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | | | || ||||||| | | ||||| || || || | || || |||| ||| | Sbjct 14578287 AAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 14578346 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC-CCGAGCCCCATG 30016 | |||| | ||||| | || ||||||||| | || || ||| || |||||| || Sbjct 14578347 CAATCAC--AGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCC-TG 14578403 Query 30017 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCG--CTCACGTAAAACTGAC 30074 || || || | || ||| |||| || || ||| | || ||||| | ||||| | Sbjct 14578404 TCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCAC--AGAACTGGC 14578461 Query 30075 ACATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGCA 30132 | | || ||||| ||||| || ||||| |||| | | |||| | ||||| | || Sbjct 14578462 AAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGA--AGGCCTTTTAGATTCCAAACACA 14578519 Query 30133 CACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTG 30192 || || ||| | ||||| || |||||| | |||| ||| || ||||||||||| Sbjct 14578520 CATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTG 14578579 Query 30193 ATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCT 30252 || || || || || |||| ||| || | || || || || |||||||| Sbjct 14578580 GTCTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCCT 14578639 Query 30253 CCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTT 30312 |||||| || || || || || || ||||| | ||| | | || ||| | Sbjct 14578640 CCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAGTCCCAGGCT 14578699 Query 30313 GTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAGAGAGCTC 30372 |||||||||||||| ||| || |||| ||||||||||| | ||||| ||| || || Sbjct 14578700 GTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTTC 14578759 Query 30373 TTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAA 30432 ||| | || ||||| | ||| | ||||||| |||||||| || ||| | || || Sbjct 14578760 TTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCAGAA 14578819 Query 30433 GACCCTCTTGGTCGT 30447 || |||||| || Sbjct 14578820 CACAAGCTTGGTTGT 14578834 >seq5 Length=100893473 Score = 150 bits (166), Expect = 1e-31 Identities = 130/161 (81%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || || Sbjct 90679540 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 90679599 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 ||||| || |||||||| || ||||||||||| ||||| || || ||||| |||| | Sbjct 90679600 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 90679659 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCAT 30102 ||||| ||||| || | ||||||||| ||||| || ||||| Sbjct 90679660 ACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 90679700 Score = 102 bits (112), Expect = 7e-17 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 30222 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGT 30281 |||| || | || | ||| || |||||||||||||| || || || ||||| || | | Sbjct 90690678 TCATATCTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAAT 90690737 Query 30282 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||| ||||||| | ||| ||| ||||||||||||||| || || ||||| | Sbjct 90690738 CTCCTTCTTCCCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 90690797 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||||||| || ||||| ||| || ||||| | || ||||| || Sbjct 90690798 CCCAGATCTTCACTCCCTTAGAAGACAGTTCTTTAGCATTGGTGGATCC 90690846 >seq8 Length=93792748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 110410 CTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 110469 || ||||| |||| || || || ||| ||| |||||||||||| || || ||||||||| Sbjct 84117452 CTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGAATGGAGAAC 84117511 Query 110470 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 || ||||| |||||||| ||||||| ||||| || ||| Sbjct 84117512 CAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 84117550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406298753112384