Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq7 251 6e-62 seq28 205 8e-48 seq5 152 5e-32 >seq7 Length=94539749 Score = 251 bits (278), Expect = 6e-62 Identities = 386/552 (70%), Gaps = 9/552 (2%) Strand=Plus/Plus Query 6499 GAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTT 6558 ||||| |||||| |||| || |||| | | ||||| | || |||| |||| || Sbjct 47936674 GAGCTTGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATT 47936733 Query 6559 CAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGAC 6618 |||||| ||||| | ||| ||| | ||||| || | || || || || | || || Sbjct 47936734 CAGGTAAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGAT 47936793 Query 6619 ATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCC 6678 || | |||||||| |||||||| ||| || || |||||||| ||||||||| || Sbjct 47936794 GTGTTCCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCC 47936853 Query 6679 C---------ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGAC 6729 | |||||||| || | || || |||||||||||||||| | ||| | || Sbjct 47936854 CCCCGGGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCAC 47936913 Query 6730 GTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTT 6789 ||||| ||||||| || ||||| || || | | || || |||| || || |||||||| Sbjct 47936914 CTAGAACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGAAGGTCTTTCGGGTT 47936973 Query 6790 CCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTA 6849 ||| || ||| | | ||| |||||||| |||||||| | || | ||||| || || | Sbjct 47936974 CCAAGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTT 47937033 Query 6850 CTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCC 6909 ||||||||||| |||| || || ||||| || | | | | || || ||||| Sbjct 47937034 TTGCAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCC 47937093 Query 6910 AAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAA 6969 ||| || ||||||| || || || || ||||| || || || || || | | ||| Sbjct 47937094 AAAATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAA 47937153 Query 6970 CCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGA 7029 |||| | |||||| ||||||||| | ||| | | |||||||||||||| ||| ||| Sbjct 47937154 CCCCAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTTGGA 47937213 Query 7030 CGAGAGCTCCTT 7041 || || || || Sbjct 47937214 AGACAGTTCTTT 47937225 Score = 251 bits (278), Expect = 6e-62 Identities = 386/552 (70%), Gaps = 9/552 (2%) Strand=Plus/Minus Query 34304 AAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTG 34363 || || || || ||| ||| |||||||||||||| | | ||| | ||||||||| || Sbjct 47937225 AAAGAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGTCAATGGGGCCCGAGACTTTTTG 47937166 Query 34364 GACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAG 34423 |||| | ||||||| | | || || || || || ||||| || || || || || Sbjct 47937165 GACAGCCTGGGGTTCTCCAGGAGAGAAGAAGGAGATTTAGGCCCAGTTTATGGCTTTTAG 47937106 Query 34424 TGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCG 34483 ||||| || |||||||| || || | | | | || ||||| || || |||| Sbjct 47937105 TGGAGGCATTTTGGGGCAGAACATAAAGATATGAATTCAGATTATTCAGGCCAAGGAGTA 47937046 Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 ||||||||||| | || || ||||| | || | |||||||| |||||||| ||| | Sbjct 47937045 GACCAGCTGCAAAAAGTTATTGACACAATCAAAAGTAACCCTGAGGACAGAAGAATCCTC 47936986 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 | ||| || ||||||||||| || || |||| || || | | || || ||||| || || Sbjct 47936985 ACGTGTGCTTGGAACCCGAAAGACCTTCCTCAGAGGGTGTTGCCTCCCTGCCATGCCGTC 47936926 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 ||||| ||||| || | ||| | |||||||||||||||| || || | || |||||| Sbjct 47936925 TGCCAGTTCTAGGTGGTGAACAGTAAGCTGTCCTGCCAGCTGTACCAGAGCTCAGGAGAC 47936866 Query 34664 AT---------GGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTAC 34714 || ||| ||||||||| |||||||| || || ||| |||||||| ||| Sbjct 47936865 ATGGTCCCGGGGGGAAGAGGGGTGCCTTTCAACATGGCCAGCTACCACCTGCTCACCTAC 47936806 Query 34715 ATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCG 34774 ||||| | || || || | || || || || | || ||||| | ||| ||| | Sbjct 47936805 ATGATGGAACACATCATGAGCCTGAAGCCAGGTGACTTTGTACATACTTCGGGAGATACA 47936746 Query 34775 CATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCG 34834 ||||| |||||||| |||| |||| || | ||||| | | |||| || |||| Sbjct 47936745 CATATTTACCTGAATCACACTGAGCCCCTGAAAGTTCAGCTTCCATGAGAACCAAGACCT 47936686 Query 34835 TTCCCCCAGCTC 34846 |||||| ||||| Sbjct 47936685 TTCCCCAAGCTC 47936674 >seq28 Length=34889373 Score = 205 bits (226), Expect = 8e-48 Identities = 429/632 (68%), Gaps = 8/632 (1%) Strand=Plus/Plus Query 6489 GAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCT 6548 ||| ||||||||||| |||||| |||| || ||||| || |||| | ||| ||| Sbjct 14578212 GAAGAATTTTGAGCTTGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCT 14578271 Query 6549 CGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA 6608 | |||| |||||||| || | ||||| ||||| |||| || | || || || || Sbjct 14578272 CAGTGTGATTCAGGTAAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCA 14578331 Query 6609 ACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCA 6668 ||| || || || |||| | |||||| || || || || ||| |||| |||| Sbjct 14578332 GGCCCGTGATGTGTGCAATCAC--AGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCA 14578389 Query 6669 CCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGA 6728 || | || ||| ||||||| || | | || |||| |||||||||| | ||| | Sbjct 14578390 CCTCCAAGCCCCTGTCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCT 14578449 Query 6729 CGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGT 6788 | |||| ||||| || | ||||| || || || |||||| |||| || | || | | Sbjct 14578450 CACAGAACTGGCAAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGAT 14578509 Query 6789 TCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGT 6848 |||| | ||||| | ||| |||||||| |||||||| || | ||||| | | | Sbjct 14578510 TCCAAACACACATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCT 14578569 Query 6849 ACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCG-CTTC-GCTCCCCCGATACTCCGC 6906 ||||||||||| |||| || || ||| || | ||| | | | ||| || || Sbjct 14578570 TTTGCAGCTGGTCTACTCCTTGACCTATATAATCTGAATTCAGAT--CTTTATATTCGGC 14578627 Query 6907 CCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG 6966 |||||| || |||||||| || || || || ||||| | || || | || | || ||| Sbjct 14578628 CCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTC-AGGTGG 14578686 Query 6967 -GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 || ||| | |||||| |||||||| || || || ||||||||||||| ||| Sbjct 14578687 AGAGTCCCAGGCTGTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCT 14578746 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 ||| || || || || | || |||| || | | | ||||||| |||||| | | Sbjct 14578747 TGGAAGACAGTTCTTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAA 14578806 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGC 7117 | || | ||| ||||| | || || ||| || Sbjct 14578807 CAGCCCTGCAGAACACAAGCTTGGTTGTCCGC 14578838 Score = 205 bits (226), Expect = 8e-48 Identities = 429/632 (68%), Gaps = 8/632 (1%) Strand=Plus/Minus Query 34228 GCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTCGTGAG 34287 || ||| || || | ||||| ||| | || || | |||||| ||||||| | | | Sbjct 14578838 GCGGACAACCAAGCTTGTGTTCTGCAGGGCTGTTTTGGAGGAGTTGCTGTGTCTTATCAA 14578779 Query 34288 GGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGG 34347 || |||| || | || || || || ||| ||| ||||||||||||| || || Sbjct 14578778 GGAATCCACCAATGCTAAAGAACTGTCTTCCAAGGGACTGAAGATCTGGGATGCCAGTGG 14578719 Query 34348 GTCTCGAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCC 34406 || |||||||| |||||| | ||| || ||| || | || | || || | |||| Sbjct 14578718 ATCCTGAGACTTTTTGGACAGCCTGGGACTCTCCACCT-GAGAACAAGGAGATTCAGGCC 14578660 Query 34407 CGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGC-GAAG-CGGA 34464 | || || || || |||||||| || |||||||| || ||| | | | ||| | || Sbjct 14578659 CAGTTTATGGCTTTCAGTGGAGGCATTTTGGGGCCGAATATAAAG--ATCTGAATTCAGA 14578602 Query 34465 CTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCC 34524 ||| || || |||| ||||||||||| | | | ||||| | || ||||| Sbjct 14578601 TTATATAGGTCAAGGAGTAGACCAGCTGCAAAAGGCTACTGACACAATCAAAACCAACCC 14578542 Query 34525 TGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCT 34584 ||| |||||||| ||| | ||||| | ||||| | || | || |||| |||||| || Sbjct 14578541 TGACGACAGAAGAATCTTCATGTGTGTTTGGAATCTAAAAGGCCTTCCTCAGATGGCACT 14578482 Query 34585 CCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCT 34644 || || ||||| | || ||||| |||| | | ||| | |||||||||| |||| Sbjct 14578481 GCCTCCCTGCCATGCTCTTTGCCAGTTCTGTGAGGTGAACATTGGGCTGTCCTGCTAGCT 14578422 Query 34645 CTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCT 34704 || | | || ||||||| ||| || | |||||| |||| ||| || || || || Sbjct 14578421 GTACTAGGGTTCAGGAGACAGGGGCTTGGAGGTGCCTTTCACCATCGCCAGGTATGCCTG 14578362 Query 34705 GCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCTGGTGCATACGTT 34764 |||||| | |||| || || || ||| || || || || | || |||| || Sbjct 14578361 GCTCACCT--GTGATTGCACACATCACGGGCCTGAAGCCAGGTGACTTTGTATATACTTT 14578304 Query 34765 GGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGGATCCAGCTGCAACGAGA 34824 ||| ||||| | || |||||||| |||| |||| ||| | |||| || ||||| Sbjct 14578303 GGGAGATGCACTCATTTACCTGAATCACACTGAGCTGCTGAAAGTTTAGCTCCAGCGAGA 14578244 Query 34825 GCCCCGACCGTTCCCCCAGCTCAAAATTATTC 34856 || |||| |||||| ||||||||||| ||| Sbjct 14578243 ACCAGGACCTTTCCCCAAGCTCAAAATTCTTC 14578212 >seq5 Length=100893473 Score = 152 bits (168), Expect = 5e-32 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| | ||| || || |||||||| |||||||| | ||| Sbjct 90679552 TGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGCACCCCCAGGCCC 90679611 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 |||||||| || | || || ||||||||||||||||| || ||| | |||||||| ||| Sbjct 90679612 ATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACCACGTAGAACTGG 90679671 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAG 6773 || |||| |||||| || || ||||||||| ||| Sbjct 90679672 CAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAG 90679705 Score = 152 bits (168), Expect = 5e-32 Identities = 126/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34572 CTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGC 34631 ||| ||||||||| || || |||||| |||| ||||| |||||||| | ||| || |||| Sbjct 90679705 CTCAGATGGCGCTGCCTCCCTGCCACGCCCTTTGCCAGTTCTACGTGGTGAACGGCGAGC 90679646 Query 34632 TGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTG 34691 ||||||||||||| || || | || ||||||||||| | |||||||| |||||||| | Sbjct 90679645 TGTCCTGCCAGCTGTACCAGAGGTCAGGAGACATGGGCCTGGGGGTGCCTTTCAACATCG 90679586 Query 34692 CTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 | || ||| | |||||||| ||||||||||| || Sbjct 90679585 CCAGCTACTCCCTGCTCACCTACATGATCGCACA 90679552 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 6905 GCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGAT 6964 |||||||| || |||||||| || || || |||||||| || || || || ||||| | Sbjct 90690695 GCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAATCTCCTTCTTCCCGGGCA 90690754 Query 6965 GGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCC 7024 | ||| ||| | |||||| ||||||||||||||| | || |||||||||||||| ||| Sbjct 90690755 GAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATCTTCACTCCC 90690814 Query 7025 CGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || || || || || | || |||| Sbjct 90690815 TTAGAAGACAGTTCTTTAGCATTGGTGG 90690842 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | || || || || || ||| |||||||||||||| || | ||||||| Sbjct 90690842 CCACCAATGCTAAAGAACTGTCTTCTAAGGGAGTGAAGATCTGGGATGCCAATGGGTCTC 90690783 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||| ||| | | ||||| || || || || |||||||| | Sbjct 90690782 GAGACTTTTTGGACAGCCTGGGATTCTCTGCCCGGGAAGAAGGAGATTTAGGCCCGGTTT 90690723 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGC 34440 | || || |||||||| || |||||||| Sbjct 90690722 ATGGCTTTCAGTGGAGGCATTTTGGGGC 90690695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448249221085440