Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq26 181 9e-41 seq5 118 9e-22 >seq26 Length=35432990 Score = 181 bits (200), Expect = 9e-41 Identities = 191/250 (76%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 1277 ACAAG-AAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGG 1335 ||||| |||| | ||||| |||||||| ||| | || || |||||||||||||||||| Sbjct 34501826 ACAAGGAAGTCTTGATTGTGACATGGCAGAAAATAAAGGCTACAAGCCCAGAAAACATGG 34501767 Query 1336 CCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACA 1395 |||| || || | |||| |||||||| |||||||| | || || || | |||||| Sbjct 34501766 CCACCTTCAGCGAGAACCATGGGGTTGTAGTTCAGCCTCCCTATAAGGACAGGGTGAACA 34501707 Query 1396 TAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATG 1455 | || |||| || || | |||| |||| ||||||||||||| || || |||| |||| Sbjct 34501706 TCACACAGCTGGGGCTCCGAAACTCAACCCTAACCTTCTGGAATACCACCGTGGAGGATG 34501647 Query 1456 AAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGT 1515 ||||||||| || |||| | || || || ||||||||||| ||||| || |||| | | Sbjct 34501646 AAGGGTGCTTCATGTGTCTCTTCAATACCTTTGGATCTGGAAAGATCTCTGGAAAAACCT 34501587 Query 1516 GTCTAACCCT 1525 | || ||||| Sbjct 34501586 GCCTCACCCT 34501577 >seq5 Length=100893473 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| ||||||||||| ||||| || ||||||||| Sbjct 36561999 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGGATTGTGGCCTTCTTTGAG 36562058 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || |||||| Sbjct 36562059 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAC 36562118 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| |||||||| || Sbjct 36562119 ATCGCCCTCTGGATGACTGA 36562138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414464919022528