Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq85 89.7 4e-13 >seq85 Length=6926877 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || || ||||| || | |||||||| ||||| |||| || || || Sbjct 1866757 AATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAG 1866816 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 |||| || | ||| ||||| ||| || ||||| ||||| | || || Sbjct 1866817 CGACACCATCGAGAAT--GTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGAC 1866874 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| |||| || |||||||| ||||| |||| || | ||| | |||| || ||| Sbjct 1866875 CAGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTAC 1866934 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| |||||| |||| ||||| |||| |||| ||| | || || Sbjct 1866935 AACATCCAGAAAGAGTCCACTCTGCATCTGGTCCTGCGCTTGAGGGGAGG 1866984 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355852199204304