Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq72 109 4e-19 seq85 104 2e-17 >seq72 Length=11040415 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||| || | || ||||| | || ||| || ||||||||| || |||| || Sbjct 7000181 AAAATGCAGATTGTCATAAATACCCTAATGGAAAAGACCATCACTCTCAAAATTGAACCC 7000122 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 || | || | |||| |||| || ||| || || ||||| | || || || Sbjct 7000121 TCGAATACAATAGAAAATGTAAAGGCCAAGATTCGGGATAAGGAAGGAATTCCTCCTGAC 7000062 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||||||||||||||| | | |||| || || ||| Sbjct 7000061 CAGCAGGGACTGATCTTTGCTGGCAAACAACTGGAAGATGGAGGCACCTTGTCTGACTAC 7000002 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 ||||| ||||||||||| || | ||| | || || || Sbjct 7000001 AACATTCAAAAAGAGTCAACGCTTCATCTTGTGTTGAG 6999964 >seq85 Length=6926877 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || || ||| | || || || || ||||| || ||||| || ||| Sbjct 1866529 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACAATCACCCTTGAAGTAGAGCCCAG 1866588 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| |||| ||| | || |||| | | ||||| ||||| | || || || | Sbjct 1866589 CGACACCATTGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACC 1866647 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| ||||| |||||||| | ||| ||| | || |||| Sbjct 1866648 AGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACA 1866707 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 1866708 ACATCCAGAAAGAGTCCAC 1866726 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || ||| | || || || || || || || || || || ||| Sbjct 1866757 AATGCAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGAGCCCAG 1866816 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | ||||| ||||| | || || || | Sbjct 1866817 CGACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACC 1866875 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | || || |||||||| ||||| |||||||| | ||| ||| | || |||| Sbjct 1866876 AGCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACA 1866935 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 1866936 ACATCCAGAAAGAGTCCAC 1866954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337999910954816