Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq85 138 3e-27 seq93 136 9e-27 seq24 104 6e-17 seq2 104 6e-17 seq44 102 2e-16 seq7 95.1 3e-14 seq5 95.1 3e-14 seq2352 87.8 4e-12 >seq85 Length=6926877 Score = 138 bits (152), Expect = 3e-27 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| || || |||||||| ||||| |||| ||||| || | || ||| | ||||| Sbjct 1866970 CAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATC 1866911 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || ||||||||||| Sbjct 1866910 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTC 1866851 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||||| ||| ||| ||||||||||| || || || || | || || || Sbjct 1866850 TTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGTAATGGT 1866791 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||||| || || | ||| | |||||| Sbjct 1866790 CTTCCCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| ||||| || | |||||| | |||||| Sbjct 1866285 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTACGTCCATCT 1866226 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| || | || ||||| || ||||| || ||||||||| Sbjct 1866225 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCCTCCTTGTCT 1866166 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || || || || | || || ||| Sbjct 1866165 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTAATGGTC 1866106 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | |||||| Sbjct 1866105 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| |||||||| ||||| |||| ||||| || | || ||| | |||||| Sbjct 1866741 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1866682 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || || |||||||||||| Sbjct 1866681 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866622 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || || || || | ||||| ||| Sbjct 1866621 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATTGTC 1866562 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | || | |||||| Sbjct 1866561 TTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| ||||| || | || || | || ||| Sbjct 1866057 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1865998 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| || | || ||||| || || || |||||||||||| Sbjct 1865997 TCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1865938 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| ||||||||||| || || || || | ||||| || Sbjct 1865937 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCTACCTCAAGGGTGATGGTT 1865878 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || ||||| || ||||| | || | |||||| Sbjct 1865877 TTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || ||||| |||||||| || || |||| ||||| || | || || | || ||| Sbjct 1866513 AGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGTCCGTCT 1866454 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| ||||| || ||||| | | || ||||| || || || |||||||||||| Sbjct 1866453 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866394 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||||||| ||| ||| || |||||||| || || || || | ||||| ||| Sbjct 1866393 TGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGGGTGATGGTC 1866334 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || ||||| || || | ||| | |||||| Sbjct 1866333 TTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 >seq93 Length=5582385 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || ||||| || |||| ||||| || | | ||| | || ||| Sbjct 4491071 AGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCT 4491130 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || |||||||| ||||| ||||| || || Sbjct 4491131 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4491190 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 4491191 TGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 4491250 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || |||| || | ||||||||| Sbjct 4491251 TTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTT 4491285 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || || || ||||| |||| ||||| || | | ||| | |||||| Sbjct 4490387 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490446 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || ||||| || | || ||||| || ||||| ||||| || || Sbjct 4490447 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 4490506 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || ||||| || | ||||| ||| Sbjct 4490507 TGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTC 4490566 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 4490567 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 >seq24 Length=42784276 Score = 104 bits (114), Expect = 6e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| |||||||| ||||| |||| ||||| || | || || |||| Sbjct 24274760 CAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGTCCATA 24274701 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| |||| ||| ||||| | | || | || | || || ||||||| ||| Sbjct 24274700 TTCCAGCTGTTTCCTAGCAAAGATGAACCTCTGCTC-TCAAGAGGGATGCCTTCCTCGTC 24274642 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||||| ||| ||| || ||||||| || ||| || || | |||| || Sbjct 24274641 TTGGATCTTTGCCTTGACATTCTCAGTGGTGTCACTGGGTTCTACTTCAAGAATGATTGT 24274582 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||||| || || | ||| | |||||| Sbjct 24274581 CTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 >seq2 Length=111286942 Score = 104 bits (114), Expect = 6e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 370674 CAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGATG 370733 |||| || | ||||||||| |||| |||||| || ||||| ||||| ||||| |||| || Sbjct 83116600 CAGGGTGTCTAAAAAATCAAAATAGATGTTGGTATAGGATCGGATCCCCTCCTCCTGCTG 83116659 Query 370734 GATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| |||||||||| || | |||||||| Sbjct 83116660 GATCAAAAAAGGTAGTATTAAAGTTACAGTCAGTTAA 83116696 >seq44 Length=19290530 Score = 102 bits (112), Expect = 2e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 7556 TTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGG 7615 |||| ||||| ||| ||| || || ||||| || || |||||||| | || || || Sbjct 4816129 TTTATAACGTCATTGTTATAGCACAGGCCTTCGTAATAATTTTCTTCATAGTAATACCAA 4816070 Query 7616 TTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGG 7675 | || || || || |||||||| ||||| |||| | || ||| | || |||||||| | Sbjct 4816069 TCATAATCGGAGGATTCGGAAACTGATTAGTTCGCCTTATAATTTGGGCACCTGATATAG 4816010 Query 7676 CTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 |||| || | || |||||||| || ||||||||||| || ||||| Sbjct 4816009 CTTTCCCTCAAATAAATAATATAAGCTTCTGATTACTACCTCCATCCTT 4815961 >seq7 Length=94539749 Score = 95.1 bits (104), Expect = 3e-14 Identities = 80/98 (82%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| |||||||||||||||| |||||| || |||||||||| |||| |||| Sbjct 35277759 TTCTGGATGTCCAAAAAATCAGAATAGATGTTGGTATAGGATAGGAT---CTCCTCCTGC 35277815 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||| ||||| ||| ||| ||||| ||| | ||||||| Sbjct 35277816 TGGGTCAAAGAAGGTAGCATTAAGATTACAGTCAGTTA 35277853 >seq5 Length=100893473 Score = 95.1 bits (104), Expect = 3e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || || |||||||| || || ||||| || || ||||| ||||| |||||||| |||||| Sbjct 53357162 TGTCCGTCAGTAATGGAAATGACATTCGTTGGAATATAGGCAGACACATCACCAGCTTGT 53357103 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || ||||| ||||| | || |||||||||||| Sbjct 53357102 GTTTCTATGACTGGTAAAGCTGTCAAGGAGCCACCACCAAAA 53357061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/226 (69%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACA-TTGTAATCGGCCAAAG 225550 || |||||||| ||||| || || |||||||||||| || ||||| || | ||| | Sbjct 67107623 ACAAAGTCTCAACACAAGATGAAGCATGGATTCTTTTTTGAATGTTGTAGTCAGACAAGG 67107564 Query 225551 TTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATAC 225610 | |||||||| || ||||| ||||| ||| | || | || | | || ||||| Sbjct 67107563 TAGGTCCATCTTCCAGTTGCTTGCCAGCAAAGGTTAGACTCTGAT---CAGGAGGAATTT 67107507 Query 225611 CTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||| || |||||||| ||| | | ||| || | || ||| ||| | || | Sbjct 67107506 CTTCCTCATCCTGGATCTTGGCCTTTATATTTTCTATTGGATCCAAGGGTTCAATCTCCA 67107447 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| ||||| || | | ||||||||||| | ||||| || Sbjct 67107446 GAGTGATGGTCTTCCCTTTTAGGGTTTTTATGAAAATCTGCATCTT 67107401 >seq2352 Length=16866 Score = 87.8 bits (96), Expect = 4e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||| || |||||||| ||||||| |||||||| || || || || ||||| |||| Sbjct 6054 TTCAGGGTGTCCAAAAAACCAGAATAGGTGTTGATATAGAATTGGGTCTCCTCCTCCTGC 5995 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTA 370769 ||||||||||| ||||||| | ||| | ||| |||| Sbjct 5994 AGGATCAAAAAAAGTAGTATTGAGATTGCGATCCGTTA 5957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192495263072288