Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq7 165 7e-36 seq5 161 8e-35 seq28 152 4e-32 seq8 93.3 3e-14 >seq7 Length=94539749 Score = 165 bits (182), Expect = 7e-36 Identities = 350/532 (66%), Gaps = 9/532 (2%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||| || ||||| || || | ||||||| |||| || || ||| | |||| Sbjct 47936679 TGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGT 47936738 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || | ||||||| || || ||||| || || || | || | ||| ||| Sbjct 47936739 AAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTT 47936798 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCC---- 29785 |||||||||| ||||| || ||||||||| ||||| || |||||||| ||| Sbjct 47936799 CCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCG 47936858 Query 29786 -----ATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAAA 29840 ||||| ||||| |||||||| |||||||| || |||| | || ||| || | Sbjct 47936859 GGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCACCTAGA 47936918 Query 29841 ACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGG 29900 |||| || | ||||||||| ||||| | || | || | |||||| |||||||| | Sbjct 47936919 ACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGAAGGTCTTTCGGGTTCCAAG 47936978 Query 29901 CACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA 29960 ||||| || ||| | ||||| || ||||| | |||| ||| | | ||||||| Sbjct 47936979 CACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTTGCA 47937038 Query 29961 GCTGATCCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAAT 30020 |||| || || || || || || |||| | |||| Sbjct 47937039 GCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAAAT 47937098 Query 30021 GCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCC 30080 ||||||||| || || || || || || | ||||| ||||| || ||| ||| Sbjct 47937099 GCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCCCA 47937158 Query 30081 TCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30132 ||||||||||||||| || || ||| | ||||||||||| || ||||| Sbjct 47937159 GGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTT 47937210 >seq5 Length=100893473 Score = 161 bits (178), Expect = 8e-35 Identities = 140/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || ||| Sbjct 90679540 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 90679599 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || |||||||| |||||||||||||| |||||||| || ||||| |||| | Sbjct 90679600 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 90679659 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCT 29887 ||||| ||||| || | ||| ||||| ||||| || ||||| || | | |||| Sbjct 90679660 ACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCATCTGAGCAAGGTCT 90679713 Score = 93.3 bits (102), Expect = 3e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 |||||||||||||| || || || ||||| || | ||||| ||||||| | ||| Sbjct 90690701 AAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAATCTCCTTCTTCCCGGGCAGAGAAT 90690760 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| || || ||||| ||||||||||| || ||||| Sbjct 90690761 CCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCATCCCAGATCTTCACTCCCTTAGAA 90690820 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || ||||| | || ||||| || Sbjct 90690821 GACAGTTCTTTAGCATTGGTGGATCC 90690846 >seq28 Length=34889373 Score = 152 bits (168), Expect = 4e-32 Identities = 400/613 (65%), Gaps = 8/613 (1%) Strand=Plus/Plus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 |||| || |||| || || | || ||||| || ||||| | || ||| | |||| Sbjct 14578227 TGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCTCAGTGTGATTCAGGT 14578286 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | | | |||||||||| || | ||||| || || || | || || |||| ||| | Sbjct 14578287 AAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 14578346 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC-CCGAGCCCCATG 29788 | |||| | ||||| | || ||||||||| | || |||||| || |||||| || Sbjct 14578347 CAATCAC--AGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCC-TG 14578403 Query 29789 TCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCG--CTCACGTAAAACTGAC 29846 || ||||| | || ||| |||| ||| || ||| | || ||||| | ||||| | Sbjct 14578404 TCTCCTGAACCCTAGTACAGCTAGCAGGACAGCCCAATGTTCACCTCAC--AGAACTGGC 14578461 Query 29847 ACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGGTTCCAGGCACACA 29906 | | |||||||| ||||| || ||||| || | | |||| | ||||| |||||| Sbjct 14578462 AAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGAAGGCCTTTTAGATTCCAAACACACA 14578521 Query 29907 CGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGAT 29966 || ||| | ||||| || |||||| | |||| ||| || ||||||||||| | Sbjct 14578522 TGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCTGGT 14578581 Query 29967 CCACCCCCATCCCCGAGTAGTCTGNNNNNNNNNNNNNNNNNNNNNNNNCGAAATGCCTCC 30026 | || || || || |||| | |||||||||| Sbjct 14578582 CTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCCTCC 14578641 Query 30027 ACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGT 30086 |||| || || || || || || ||||| | ||| | | || ||| ||| Sbjct 14578642 ACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAGTCCCAGGCTGT 14578701 Query 30087 CCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 30146 |||||||||||| ||| || |||| ||||||||||| | ||||| || || |||| Sbjct 14578702 CCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTTCTT 14578761 Query 30147 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGA 30206 | | || ||||| | ||| | ||||||| |||||||| || ||| | || || | Sbjct 14578762 TAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCAGAACA 14578821 Query 30207 CCCTCTTGGTCGT 30219 | |||||| || Sbjct 14578822 CAAGCTTGGTTGT 14578834 >seq8 Length=93792748 Score = 93.3 bits (102), Expect = 3e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 114293 CTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGGATGGAGAAC 114352 || ||||| |||| || | || ||| ||| |||||||||||| || || ||||||||| Sbjct 84117452 CTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATTCTTCTCAGGAATGGAGAAC 84117511 Query 114353 CAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 || ||||| |||||||| ||||||| ||||| |||||| Sbjct 84117512 CAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 84117550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406151557331872