Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 120 3e-22 seq21 107 2e-18 seq43 91.5 1e-13 >seq9 Length=85640724 Score = 120 bits (132), Expect = 3e-22 Identities = 101/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| |||||||| || ||||| || ||||| || | ||| ||||| | ||||||||| | Sbjct 49095632 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 49095691 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| |||||||||||||| || || || ||||| || |||||||| || ||||| | Sbjct 49095692 TTAGCCAGAATATAGCGGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 49095751 Query 4690 CTAC 4693 |||| Sbjct 49095752 CTAC 49095755 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 4266 TCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAA 4325 || || ||||| ||||| |||||||| ||||| |||||||| ||||| |||||||||||| Sbjct 49076096 TCTGAAACTCGTTTTTCAAAGAAATTTGTTTTCCCTTCTAAAGAAATGTTTTCCATAAAA 49076155 Query 4326 TCAAACGGATT 4336 ||||| ||||| Sbjct 49076156 TCAAAGGGATT 49076166 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| ||||| || || ||||||||||||||||| || || | Sbjct 49099817 AAAATCTT---ACCAAGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 49099873 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| || || | |||| || ||||| || || | ||| || | Sbjct 49099874 TGTGGGAGATAAAATACTTCTCATCTGATGTAAGCTTGTTCCAATGAGGGAGATCCTTTG 49099933 Query 5041 TTAAATCAAC 5050 ||| ||||| Sbjct 49099934 ATAAGTCAAC 49099943 >seq21 Length=46401353 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || ||||| | || |||||||| |||| || || Sbjct 19708523 TCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCTTG 19708464 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || |||||||| || ||||| ||| Sbjct 19708463 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGGCT 19708404 Query 4692 AC 4693 || Sbjct 19708403 AC 19708402 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 19705634 TCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 19705575 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || || || || | ||||| || | |||||||| | | ||||| Sbjct 19705574 ATTTGGAAGCCATAGAAACAGCGGGCTTCGGTAATCTGAACTTCTTGGCTAAATC 19705520 >seq43 Length=20144005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 166/240 (69%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 34306 AAAAACATACAAATGGTTCAGTATATTTATAAAAACACATCTTCTTACGGAGATCCTCTA 34365 ||||||| ||||||||| || |||||||| ||| ||||| || | | | ||| || Sbjct 7514985 AAAAACAAACAAATGGTACAATATATTTACAAATACACAAGTTATCCTG---ACCCTATA 7515041 Query 34366 ATGTTGATGAAAAGCGCTAGAAGTAACTGCTGGGATAAAACCGCTGAGTACGGTCTTTAC 34425 | |||||||||| ||||||| || |||||| |||| | | || || || || || Sbjct 7515042 CTACTGATGAAAAGTGCTAGAAATAGTTGCTGGTCTAAAGACTCAGAATATGGACTCTAT 7515101 Query 34426 TCAGTATATCAAGGAGGAATACACTATCTaaaaaaaGGAGATAGTGTGTTTGTAACAGTT 34485 || | ||||||||||||||| | || ||| || || || | ||||| | || Sbjct 7515102 TCCATCTATCAAGGAGGAATATTTGAGCTTAAAGAAAATGACAGGATTTTTGTCTCTGTA 7515161 Query 34486 ACTAACAAAAACTTTTTAGCGATGGACTACAGAAGTGA-CTATTTTGGAGCGTTTTTAAT 34544 ||||| | | || | | |||||| | ||||| | | |||||| || |||||||| Sbjct 7515162 ACTAATGGACAGTTGATTGACATGGACCA-AGAAGCCAGTTTTTTTGGGGCCTTTTTAAT 7515220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427037358623216