Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq7 172 4e-38 seq28 159 3e-34 seq5 141 7e-29 >seq7 Length=94539749 Score = 172 bits (190), Expect = 4e-38 Identities = 360/534 (67%), Gaps = 13/534 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || ||||| || || | |||||| ||||| || || ||||| ||||| Sbjct 47936679 TGGGGAAAGGTCTTGGTTCTCATGGAAGCTGAACTTTCAGGGGCTCAGTGTGATTCAGGT 47936738 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | || | |||||| || || ||||| || || || | || | ||| ||| Sbjct 47936739 AAATATGTGTATCTCCCGAAGTATGTACAAAGTCACCTGGCTTCAGGCTCATGATGTGTT 47936798 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC---- 27279 |||||||||| ||||| || ||||||||| ||||| || || ||||| ||| Sbjct 47936799 CCATCATGTAGGTGAGCAGGTGGTAGCTGGCCATGTTGAAAGGCACCCCTCTTCCCCCCG 47936858 Query 27280 -----ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAA 27334 ||||| || || |||||||| ||||| || || |||| | | || || | Sbjct 47936859 GGACCATGTCTCCTGAGCTCTGGTACAGCTGGCAGGACAGCTTACTGTTCACCACCTAGA 47936918 Query 27335 ACTGACATATGGCGTGGCACGGAGG-AAGAGCCA-TGAGGCCCAAGTCTTTGGGGTTCCA 27392 |||| || | ||| ||||| ||||| || | || ||||| | |||||| |||||||| Sbjct 47936919 ACTGGCAGACGGCATGGCAGGGAGGCAACACCCTCTGAGGA--AGGTCTTTCGGGTTCCA 47936976 Query 27393 GGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTG 27452 || ||| || ||| | ||||| || ||||| | |||| ||| | | ||||| Sbjct 47936977 AGCACACGTGAGGATTCTTCTGTCCTCAGGGTTACTTTTGATTGTGTCAATAACTTTTTG 47937036 Query 27453 CAGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAA 27512 |||||| || || || || || || ||| |||| || | | ||||| || || Sbjct 47937037 CAGCTGGTCTACTCCTTGGCCTGAATAATCTGAATTCATATCTTTATGTTCTGCCCCAAA 47937096 Query 27513 ATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCC 27572 ||||||||| | || || || || || || | ||||| ||||| || ||| || Sbjct 47937097 ATGCCTCCACTAAAAGCCATAAACTGGGCCTAAATCTCCTTCTTCTCTCCTGGAGAACCC 47937156 Query 27573 CCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 27626 | ||||||||||||||| || || ||| | ||||||||||| || ||||| Sbjct 47937157 CAGGCTGTCCAAAAAGTCTCGGGCCCCATTGACATCCCAGATCTTCACTCCCTT 47937210 >seq28 Length=34889373 Score = 159 bits (176), Expect = 3e-34 Identities = 409/616 (66%), Gaps = 14/616 (2%) Strand=Plus/Plus Query 27104 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGT 27163 |||| || |||| || || | || ||||| | |||||| | || ||||| ||||| Sbjct 14578227 TGGGGAAAGGTCCTGGTTCTCGCTGGAGCTAAACTTTCAGCAGCTCAGTGTGATTCAGGT 14578286 Query 27164 AGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 27223 | | | | || ||||||| || | ||||| || || || | || || |||| ||| | Sbjct 14578287 AAATGAGTGCATCTCCCAAAGTATATACAAAGTCACCTGGCTTCAGGCCCGTGATGTGTG 14578346 Query 27224 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC-CCGAGCCCCATG 27282 | |||| | ||||| | || ||||||||| | || || ||| || |||||| || Sbjct 14578347 CAATCAC--AGGTGAGCCAGGCATACCTGGCGATGGTGAAAGGCACCTCCAAGCCCC-TG 14578403 Query 27283 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAA---AACTGA 27339 || || || | || ||| |||| || || ||| ||| | | || | | ||||| Sbjct 14578404 TCTCCTGAACCCTAGTACAGCTAGCAGGACAGC---CCAATGTTCACCTCACAGAACTGG 14578460 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCAT--GAGGCCCAAGTCTTTGGGGTTCCAGGCGC 27397 || | || ||||| ||||| || ||||| |||| | | |||| | ||||| | | Sbjct 14578461 CAAAGAGCATGGCAGGGAGGCAGTGCCATCTGAGGA--AGGCCTTTTAGATTCCAAACAC 14578518 Query 27398 ACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCT 27457 ||| || ||| | ||||| || |||||| | |||| ||| || |||||||||| Sbjct 14578519 ACATGAAGATTCTTCTGTCGTCAGGGTTGGTTTTGATTGTGTCAGTAGCCTTTTGCAGCT 14578578 Query 27458 GATCCACCCCCATCCCCGAGTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCC 27517 | || || || || || ||| ||| || | || || || || ||||||| Sbjct 14578579 GGTCTACTCCTTGACCTATATAATCTGAATTCAGATCTTTATATTCGGCCCCAAAATGCC 14578638 Query 27518 TCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCT 27577 |||| || || || || || || || ||||| | ||| | | || ||| Sbjct 14578639 TCCACTGAAAGCCATAAACTGGGCCTGAATCTCCTTGTTCTCAGGTGGAGAGTCCCAGGC 14578698 Query 27578 TGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCT 27637 ||||||||||||||| ||| || |||| ||||||||||| | ||||| || || | Sbjct 14578699 TGTCCAAAAAGTCTCAGGATCCACTGGCATCCCAGATCTTCAGTCCCTTGGAAGACAGTT 14578758 Query 27638 CTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAA 27697 |||| | || ||||| | ||| | ||||||| |||||||| || ||| | || | Sbjct 14578759 CTTTAGCATTGGTGGATTCCTTGATAAGACACAGCAACTCCTCCAAAACAGCCCTGCAGA 14578818 Query 27698 AGACCCTCTTGGTCGT 27713 | || |||||| || Sbjct 14578819 ACACAAGCTTGGTTGT 14578834 >seq5 Length=100893473 Score = 141 bits (156), Expect = 7e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || ||||||||||||||||| || || Sbjct 90679540 AGTCCTGTGATGTGTGCGATCATGTAGGTGAGCAGGGAGTAGCTGGCGATGTTGAAAGGC 90679599 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 ||||| || |||||||| || ||||||||||| ||||| || || ||||| || | Sbjct 90679600 ACCCCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAGCTCGCCGTTCACC 90679659 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCAT 27368 ||||| ||||| || | ||||||||| ||||| || ||||| Sbjct 90679660 ACGTAGAACTGGCAAAGGGCGTGGCAGGGAGGCAGCGCCAT 90679700 Score = 93.3 bits (102), Expect = 3e-14 Identities = 122/169 (72%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 27488 TCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGT 27547 |||| || | || | ||| || ||||||||||| || || || || ||||| || | | Sbjct 90690678 TCATATCTTTATATTTTGCCCCAAAATGCCTCCACTGAAAGCCATAAACCGGGCCTAAAT 90690737 Query 27548 CTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 27607 |||| ||||||| | ||| ||| ||||||||||||||| || || ||||| | Sbjct 90690738 CTCCTTCTTCCCGGGCAGAGAATCCCAGGCTGTCCAAAAAGTCTCGAGACCCATTGGCAT 90690797 Query 27608 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 |||||||||| || ||||| || || ||||| | || ||||| || Sbjct 90690798 CCCAGATCTTCACTCCCTTAGAAGACAGTTCTTTAGCATTGGTGGATCC 90690846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369496608076112