Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq80 123 3e-23 seq29 111 2e-19 seq21 111 2e-19 >seq80 Length=8685383 Score = 123 bits (136), Expect = 3e-23 Identities = 130/171 (76%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || ||||| ||||| || || |||||| ||| |||| || || ||||| || | Sbjct 8338374 TCCAGCCATAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8338315 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 ||| ||||| ||||||||||||||||||||||| ||||| ||||| || | | || | Sbjct 8338314 TCAGAGACTGGCTTTGATCGATGAAAGCTCCTCTCTCAGCTGCCATCTTCAGTACAGTTT 8338255 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA 77019 |||||| |||||||| | || || ||| ||| || | ||||| |||| Sbjct 8338254 TTTGAGAGATTTCCCACACTGTCTTATAAAGTTGCTTCAGGTCATCAGGAA 8338204 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | || Sbjct 8335811 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 8335752 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 8335751 TCATTATTCCCCAGTATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 8335692 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 8335691 TTTCTTACACCAT 8335679 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||||||||| |||||||| || ||||| || |||| |||||| || | || | ||| Sbjct 8323066 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGGGCAAAAAATAGGTCCCTGGCACGCTGT 8323007 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| ||||| |||||||| || | ||| || ||||| | || || ||||||| || Sbjct 8323006 TCTTCCTTTCCCGTATTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 8322947 Query 78123 TCTAGATATATTGCCATAACTCCAGGTCG 78151 || ||||| || || | | |||||||| Sbjct 8322946 TCCAGATAAATAGCAAATGCCCCAGGTCG 8322918 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 77355 GATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAACTCGCTTCCAA 77413 || || | ||| |||||||| || || | || || || ||||||||||| |||||||| Sbjct 8331341 GAACCCTCATAGGTTTCATATGGGCCATGCTCCTTG-GCCAGTTCACAACTGGCTTCCAA 8331283 Query 77414 TGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATC 77473 ||||| |||||||| ||||| ||||| | |||||| | |||||| || ||| || Sbjct 8331282 GGCTCCATAATAAATGGTTTCAAAAATTTGCTTATTCAATAATTGTGCCTCTGGACTCTC 8331223 Query 77474 AAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGG 77533 ||| ||||| | || ||||| |||||||| | || || || ||||| |||| || Sbjct 8331222 AAAAGGATACCTCATCAGGATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAACGGG 8331163 Query 77534 TCTATGTCTCTTATTGGA 77551 | ||| | ||||| || Sbjct 8331162 GCGATGGCGTTTATTTGA 8331145 Score = 105 bits (116), Expect = 9e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || ||||| |||||||| || ||||| || || ||| Sbjct 8313735 GTACCAGCATTGAAGAGAGTGGGGGAGGCATGAGTAAACCACTTCTCAGAGAGAAGGTTG 8313676 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 |||||||||||||| | || ||||| || ||||| || || | ||| | ||||||| Sbjct 8313675 TATGTTTCAATAGCAGCATCAATGTCTTCTTTGTGAATCCCAACAGATACCCTCATCAAC 8313616 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 8313615 ATATGTTGTGGTCTTTCAGCC 8313595 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 77915 ATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCA 77974 ||||||| |||||||| ||||||||||| ||||||| ||||| ||||||||||| || Sbjct 8323499 ATATAGCTTCTCAAATTCCTCTCCCCAAACCTCATCCAGACCAGGACATTCATTTGGACA 8323440 Query 77975 CATCAATGACCAGTC 77989 |||||| |||||||| Sbjct 8323439 CATCAAAGACCAGTC 8323425 >seq29 Length=34755717 Score = 111 bits (122), Expect = 2e-19 Identities = 304/452 (67%), Gaps = 19/452 (4%) Strand=Plus/Minus Query 48116 ATACAACAAATGTTTAAACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACT 48175 ||| |||| ||||||||| |||| ||| ||||| | | || | |||| | ||||| || Sbjct 11063590 ATATAACACATGTTTAAATATTAGACAGGCAAAGTTAG--TGCAAACCTCC-TCTCTGCT 11063534 Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 | | || || ||||||| || || ||| ||| ||| |||| ||||| |||| ||| Sbjct 11063533 AGCAAGTTAATTGGAAAATGGGATTCCAGGCCTTAATCCTTGTTTCTTGAGGCAAAGTAT 11063474 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | ||| |||||||||| || || || ||| ||| || ||| | Sbjct 11063473 CTTTACAAAATCATCAGAAAAGAAGGTGTTCTCCACTGCCTCAAG-GCTATAACCTGTTT 11063415 Query 48296 TCCGTAACTGGCTTCGTTGTGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACA 48355 ||| | | ||||| |||| ||| | || || | ||||||||||||||||||| Sbjct 11063414 TCCAAGAGTAGCTTCTTTGT---TCC-CAGTCAGGCTCCATCAGCCTTCTTCTTTACATT 11063359 Query 48356 AGGCATTGTTTCTATAGCATTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGT 48415 |||||| |||| | |||| | | |||||| | || ||| ||| |||| |||||| Sbjct 11063358 AGGCATCATTTCAAGGGCATCAGAAAGAAAG---CTCTCTTTGGAATCGTTAATGTAAGT 11063302 Query 48416 ATCTATTAAAAGACTATACATTTCGGAGTG-AATATTTTCAATTGCCATC-TGAAATCCG 48473 || || ||||| | ||||||| || || || ||||| || || | |||| | Sbjct 11063301 GTCAAT--AAAGAGTCAACATTTCAGAATGCAAGCTTTTC--CTGTCACCTTGAAGTGAC 11063246 Query 48474 TAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCA 48533 | ||||||| ||||||| |||||||| | | ||||| | ||||| || ||| Sbjct 11063245 AAGAAACATCATGCTTCTGCAATCTGTACTTTTTGATTAAATC-ACCCGCCAAGTTTTCA 11063187 Query 48534 TTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | || | |||||||| |||||| || || Sbjct 11063186 -TGACCAGCCCATCACTTAGAGCAAAGAAAGC 11063156 >seq21 Length=46401353 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || ||||| || ||||||| ||| ||||| ||| Sbjct 19708523 TCATCTCTGCTAATAAGTTCATTGGAGAACGTGAGGCCAGGCATTAATCCTCGTTTCTTG 19708464 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| ||||||||||| || |||||||| || ||||| || Sbjct 19708463 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATCCCTTCTACTGCTGCAAAGGC 19708405 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 47799 AAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCCCATTTTTTGA 47855 ||||| |||| || | |||| ||| ||| | | ||||| ||||||||| | ||| Sbjct 19710136 AAGTCGGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATTCTCTGA 19710077 Query 47856 TATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCATA 47915 || || || || | |||||||| || ||||| || ||||||| ||| || || |||||| Sbjct 19710076 TACTCGCCTACTCTCTTCTCGAAGAAGTTAGTCTTCCCTTCCAGTGAAATGTTCTCCATA 19710017 Query 47916 AAATCAAATGGATT 47929 || ||||||||||| Sbjct 19710016 AAGTCAAATGGATT 19710003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694648376737280