Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq85 159 8e-34 seq93 118 2e-21 seq24 104 5e-17 seq72 91.5 3e-13 >seq85 Length=6926877 Score = 159 bits (176), Expect = 8e-34 Identities = 163/213 (77%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| ||||| ||||| |||||||| ||||||||||| || | | ||| | |||||| Sbjct 1866969 AGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGTCCATCT 1866910 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||||||| ||||| | |||||||||||| | | ||| |||||||| ||| Sbjct 1866909 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCT 1866850 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || ||| |||||| |||| | | |||| |||||| ||||| ||||| || Sbjct 1866849 TGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTACCTCAAGGGTAATGGTC 1866790 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || | ||||||||||||| ||||||| Sbjct 1866789 TTCCCAGTCAAGGTCTTCACGAAGATCTGCATT 1866757 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || ||||| ||||| || ||||||||||| || | ||||| Sbjct 1866294 CTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAAAGTA 1866235 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||||||| ||||| |||||||||||||| | | || || Sbjct 1866234 CGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCC 1866175 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || ||| |||||| |||| | | |||| |||||||||||| Sbjct 1866174 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGG 1866115 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||| || || || || | ||||||||||||| ||||||| Sbjct 1866114 GTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866073 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | |||||| || || ||||| |||||||| ||||||||||| || | | ||| Sbjct 1866750 CTCAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 1866691 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||||||||| ||||| | |||||||||||| | | ||| ||| Sbjct 1866690 CGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCT 1866631 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || ||| |||||| |||| | | |||| |||||||||||| Sbjct 1866630 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGG 1866571 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | |||||||| |||| ||||||| Sbjct 1866570 GTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATT 1866529 Score = 141 bits (156), Expect = 2e-28 Identities = 167/225 (74%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || ||||| ||||| || ||||||||||| || | | || Sbjct 1866066 CTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1866007 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||||||||| ||||| |||||||||||||| | | ||| ||| Sbjct 1866006 CGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGGATGCCT 1865947 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || ||| |||||| |||| | | |||| ||| |||||| ||| Sbjct 1865946 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCTACCTCA 1865890 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || ||||| ||||| | || ||||| |||| ||||||| Sbjct 1865889 AGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCATT 1865845 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || || || ||||| ||||| || ||||||||||| || | | || Sbjct 1866522 CTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTA 1866463 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||||||||| ||||| | |||||||||||| | | ||| ||| Sbjct 1866462 CGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCT 1866403 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| ||||| || ||| |||||| |||| | | |||| |||||||||||| Sbjct 1866402 TCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCTACTTCAAGG 1866343 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || | ||||||||||||| ||||||| Sbjct 1866342 GTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATT 1866301 >seq93 Length=5582385 Score = 118 bits (130), Expect = 2e-21 Identities = 156/215 (73%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 4490387 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490446 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 4490447 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTATCC 4490506 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || ||| |||| | | |||| ||| ||| ||||| || || || Sbjct 4490507 TGGATCTTGGCCTTCACATTCTCGATGGTGTC---ACTGGGCTCCACTTCCAGGGTGATG 4490563 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 4490564 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 Score = 109 bits (120), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || |||||||| ||||||||||| || | | ||| | |||||| Sbjct 4490615 AGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490674 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 4490675 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4490734 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 4490735 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 4490791 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 4490792 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || ||||| || ||||||||||| || | | ||| | |||||| Sbjct 4490843 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 4490902 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 4490903 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4490962 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 4490963 TGGATCTTGGCCTTCACGTTCTCAATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 4491019 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || ||||||||||||| |||||| Sbjct 4491020 GTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 87.8 bits (96), Expect = 4e-12 Identities = 151/218 (69%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || || || || || || ||||||||||| || | | ||| | || ||| Sbjct 4491071 AGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCT 4491130 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | || ||||| || || Sbjct 4491131 TCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGAGGAATGCCTTCTTTATCC 4491190 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || || || || |||| | | |||| ||| ||| || || || || || Sbjct 4491191 TGGATCTTGGCCTTCACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGATG 4491247 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || ||||| || || ||||| || |||| |||||||| Sbjct 4491248 GTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCATTTT 4491285 >seq24 Length=42784276 Score = 104 bits (114), Expect = 5e-17 Identities = 154/216 (71%), Gaps = 7/216 (3%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| || || ||||| |||||||| ||||||||||| || | | || |||| | Sbjct 24274759 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTATGTCCATAT 24274700 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || ||||| || ||||| | |||||||| || | ||| ||||||| ||| Sbjct 24274699 TCCAGCTGTTTCCTAGCAAAGATGAACCTCTGCT-CTCAAGAGGGATGCCTTCCTCGTCT 24274641 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAATA 152069 || || ||| |||||| |||| | |||| ||| |||||||||||| | || Sbjct 24274640 TGGATCTTTGCCTTGACATTCTCAGTGGTGTC---ACTGGGTTCTACTTCAAGAATGATT 24274584 Query 152070 GTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || | ||||||||||||| ||||||| Sbjct 24274583 GTCTTACCAGTCAAGGTCTTCACGAAGATCTGCATT 24274548 >seq72 Length=11040415 Score = 91.5 bits (100), Expect = 3e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 151896 ACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCT 151955 ||||||||||| || ||||||||||| |||||||| || | || || | |||||||| Sbjct 6999970 ACAAGATGAAGCGTTGACTCTTTTTGAATGTTGTAGTCAGACAAGGTGCCTCCATCTTCC 7000029 Query 151956 AGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGA 152015 || ||| || || ||||| || | ||||||||| | | ||||||||||| || || Sbjct 7000030 AGTTGTTTGCCAGCAAAGATCAGTCCCTGCTGGTCAGGAGGAATTCCTTCCTTATCCCGA 7000089 Query 152016 ATTTT 152020 || || Sbjct 7000090 ATCTT 7000094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153786029610192