Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq85 145 5e-30 seq93 132 3e-26 seq3 91.5 1e-13 >seq85 Length=6926877 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||||||| | | |||||||| || ||| |||||| ||||||||||| || Sbjct 1866532 CATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1866473 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||||||| ||||||||||||||||| | |||||| || | Sbjct 1866472 AGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGG 1866413 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || ||||| ||| | | ||| | ||||||||| || | Sbjct 1866412 AGGGATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCT 1866354 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||| || || | ||||||||||||||| ||||| Sbjct 1866353 CTACTTCAAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866302 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||||||| | | |||||||| || ||| |||||| ||||||||||| || Sbjct 1866076 CATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1866017 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| |||||||| |||||||||||||||| | |||||| || | Sbjct 1866016 AGACAGGGTACGTCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGG 1865957 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || ||||| ||| | | ||| | |||||||| || | Sbjct 1865956 AGGGATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCACTGGGCT 1865898 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||| | || || || || ||||| | ||| ||||| ||||| ||||| Sbjct 1865897 CTACCTCAAGGGTGATGGTTTTACCCGTTAAGGTTTTCACAAAGATCTGCAT 1865846 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||||||| | | |||||||| || ||| |||||| ||||||||||| || Sbjct 1866304 CATTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTC 1866245 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | || | || |||||||| |||||||||||||||| | |||||| || | Sbjct 1866244 AGACAAAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCAGG 1866185 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| || ||||| ||| | | ||| | ||||||||| || | Sbjct 1866184 AGGAATGCCCTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCT 1866126 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | ||||| ||||| || || | ||||||||||||||| ||||| Sbjct 1866125 CTACTTCAAGGGTAATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 1866074 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||||||||||||||| | | |||||||| || ||| ||| || ||||||||||| || Sbjct 1866760 CATTCCCCCTCTCAGACGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTC 1866701 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || |||||||| ||||||||||||||||| | |||||| || | Sbjct 1866700 AGACAGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGG 1866641 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || ||||| ||| | | ||| | ||||||||| || | Sbjct 1866640 AGGGATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCT 1866582 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || | || || ||||| || || | ||||||||| ||||| ||||| Sbjct 1866581 CTACTTCAAGGGTGATTGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 1866530 Score = 125 bits (138), Expect = 5e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || |||| | || ||||| || || ||| ||| || ||||||||||| || | Sbjct 1866984 CCTCCCCTCAAGCGCAGGACCAGATGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 1866925 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || |||||||| ||||||||||||||||| | |||||| || | ||| Sbjct 1866924 AGAGTACGTCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGG 1866865 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | |||||||| || ||||| ||| | | ||| | ||||||||| || || || Sbjct 1866864 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCTAC 1866806 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||| | ||||| ||||| || || | ||||||||||||||| ||||| Sbjct 1866805 CTCAAGGGTAATGGTCTTCCCAGTCAAGGTCTTCACGAAGATCTGCAT 1866758 >seq93 Length=5582385 Score = 132 bits (146), Expect = 3e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || |||||| ||||||||||| || Sbjct 4490824 CATACCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTC 4490883 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 4490884 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 4490943 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| ||||| |||| | |||| | |||||||| || | Sbjct 4490944 AGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 4491002 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 4491003 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4491054 Score = 127 bits (140), Expect = 1e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || ||| || ||||||||||| || Sbjct 4490596 CATACCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTC 4490655 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || ||| | || ||||||||||| || |||||||| | | |||||| || | Sbjct 4490656 AGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 4490715 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| ||||| |||| | |||| | |||||||| || | Sbjct 4490716 AGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTCAATGGTGTCACTGGGCT 4490774 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 4490775 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490826 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | | |||||||| || || ||||| ||||||||||| || Sbjct 4491052 CATACCACCCCTCAGGCGAAGGACCAGGTGCAGGGTCGATTCCTTCTGGATGTTGTAGTC 4491111 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || |||| ||||||||||| || |||||||| | | |||||| || | Sbjct 4491112 AGAAAGAGTACGGCCGTCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGG 4491171 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | ||||| || ||| ||||| |||| | |||| | |||||||| || | Sbjct 4491172 AGGAATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACGTTCTCGATGGTGTCACTGGGCT 4491230 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||||||| || || ||||| || || |||||||| || ||||||||||| Sbjct 4491231 CCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTTACAAAGATTTGCAT 4491282 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | | |||||||| || || ||| || ||||||||||| || | Sbjct 4490372 CCACCCCTCAGACGAAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 4490431 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || ||| | || ||||||||||| || |||||||| | | |||||| || | ||| Sbjct 4490432 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 4490491 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACC 44290 | ||||| || ||| ||||| ||||| | | |||||||| || ||||| Sbjct 4490492 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACT 4490551 Query 44291 TCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 |||| || || ||||| || || ||||||||||||||||| ||||| Sbjct 4490552 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 4490598 >seq3 Length=107953029 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/155 (74%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || ||||||||||| || || ||||| | | |||||| || | ||| | ||||| || Sbjct 38816837 TCTTCCAGCTGCTTACCTGCGAAGATGAGCCTCTGCTGGTCAGGAGGGATGCCTTCTTTA 38816896 Query 44243 TCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATC 44302 ||| | ||||| ||| || || | ||||||| || ||||||||||| || || Sbjct 38816897 TCC-TGATCTTAGCCTTTAAAGTCTCAGTGGTGTCACTGGGTTCCACCTCCAGGGTGATG 38816955 Query 44303 GTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| || | |||||||| | |||||||||||| Sbjct 38816956 GTCTTGCCATTCAGGGTCTTTATGAAGATTTGCAT 38816990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359980080875184