Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq17 179 5e-40 seq7 105 1e-17 >seq17 Length=51904812 Score = 179 bits (198), Expect = 5e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| |||||||| |||||||||||| || ||| | || || ||||||||| Sbjct 13371122 GTCTGGAACAACTGCTCGTCGTCCCATTCTGGATGCTCCTGTCTAAGCACGTCGCACACC 13371063 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||| ||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 13371062 CTGTTATGTTCCCGAAGCCAGATTGTGGCATACATCATCAGGCCAGGCACCAGCCCAAAG 13371003 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| || ||| || || | || || |||||||| | Sbjct 13371002 ACCTCCTGGCCCACAGCAAACCGCAGGTGTTCAGGGACATGAGGCGGGTAGATCATCTCT 13370943 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 13370942 GCCTGAGTCTCTTTGACAGTGGGAGGATACATCTCTCCATCAATTATCT 13370894 Score = 138 bits (152), Expect = 2e-27 Identities = 216/309 (70%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 8278 ATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTG 8337 ||| ||||| | ||| |||| | ||||| ||||| ||||| | |||| |||||||| Sbjct 13372885 ATCTGGAACACTGAATGCGGTGTAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTG 13372826 Query 8338 AATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCA 8397 || | || | |||| ||| || || || ||||| || || ||||| |||||||| Sbjct 13372825 GATTGAGGCTGTGTTGATGATTTTAAAGCCTACTTCTCCACCAAAAGTGCTAGGCTTCCA 13372766 Query 8398 GTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAA 8457 ||| || || || || || ||||||| ||||| | |||||| || || |||| Sbjct 13372765 GTAGTTAGGAGAACATATAGTATTACCCATGAGTCCTTTCAAGGAGAATGGTGCTCCCAG 13372706 Query 8458 CTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGT 8517 || | ||| |||||||||||||||| | ||||| |||||||| |||| | | | Sbjct 13372705 TTCTACCATGGTCTCACCGAAGATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGG 13372646 Query 8518 GTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTT 8577 || || |||| ||| || | ||| || || || || | || ||||| || || || Sbjct 13372645 ATAGAGTTCCATAGCATCAATGTCACCATAGAGCTCCTCTAACTCTGCAGCCATTTCTTT 13372586 Query 8578 TTCTCCTGT 8586 |||||||| Sbjct 13372585 CTCTCCTGT 13372577 Score = 114 bits (126), Expect = 2e-20 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 ||| |||||||| |||| |||||| ||||| | || |||||| ||| ||| | || Sbjct 13369944 TCTCACCCCATGGCCCAATCCTTTGGTGAAACCTGGTCCTCGCTTATGATCTGTCTTGAA 13369885 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || | |||||| | ||||||||||||||||| Sbjct 13369884 AAACTGATGGGTGAAGTGCTGGGCAAAGAATGTAAACATCATATTGGTGCCCTGGGGATC 13369825 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 13369824 TGGGATGAACTTTCTTCTCAGAAGAAATTTTTCCACAA 13369787 Score = 95.1 bits (104), Expect = 2e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 9910 ACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGTA 9969 |||||| ||||| | ||||| ||||| || ||||| || ||||| || || | ||| Sbjct 13369155 ACCTTTCACCCCCATGGGAGTAGGACAGTCATGAGGTACAGGAGGAAGGGCTCTGGTGTA 13369096 Query 9970 ATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATGGG 10029 ||||||||| ||||| || |||||||||||| || |||||| | || || | || Sbjct 13369095 ATAGGAGAGGTTGGAAAAGGCTTCCCAGCTTTTATAGCCGTAGTGAACATTATAAGTCGG 13369036 Query 10030 AGGGCTGTCAATCAAATCGGATCTACCTGA 10059 ||||| |||||||||| | ||| |||| Sbjct 13369035 CGGGCTATCAATCAAATGTGCTCTTGCTGA 13369006 Score = 93.3 bits (102), Expect = 6e-14 Identities = 185/270 (69%), Gaps = 8/270 (3%) Strand=Plus/Minus Query 8941 ACACTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGA 9000 |||||||| | ||| || ||||| | ||||| ||||| || | |||||||| || || Sbjct 13371808 ACACTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAAGTCCATGC 13371749 Query 9001 GTCATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAA 9058 || | ||| || |||||||||| || ||| | ||| |||| ||||||| Sbjct 13371748 TCCAGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGCTGTACTCCTGGTTATCAA 13371691 Query 9059 TCTCAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATA 9118 | | ||| || || || | |||| |||||||| || | ||||||| || | | | Sbjct 13371690 TTTGAAAGGCGTCAGGTAGAAGAGGGTGCCAGTGGTAGAGTGTGTTAAATTCAGCAGCAA 13371631 Query 9119 TACGATTTTGGTACTGGAA--CGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAGCTG 9176 |||| |||||||||||||| | || || ||||| ||||| | |||| ||| | Sbjct 13371630 TACGGTTTTGGTACTGGAATTCTTGGT--TGAAAAGCAGCTCGGGGTCAAACTTCAGTTT 13371573 Query 9177 AAAATGGTAGCCGCTGAGCTGCTGAACGTA 9206 || | |||||||| | ||||| || || Sbjct 13371572 GAAGTTATAGCCGCTCAAGTGCTGCACATA 13371543 >seq7 Length=94539749 Score = 105 bits (116), Expect = 1e-17 Identities = 165/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 ||||||| || ||| || || ||||| || |||||||||||||||||| |||| | Sbjct 36641626 TCTTGACAATGTTGAAACCTGTCTCGCCGCCAAATGTGCTGGGCTTCCAGTACTCCGGAG 36641685 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | |||||| |||||||| || |||||||| | || | || | Sbjct 36641686 AACAGATGGGATTCCCTAGGAGGCCCTTGAGGGAAAAGGGAGCCCCAATTTCTATCATAC 36641745 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||||| ||| ||| || ||| || | | | || | || | ||||| Sbjct 36641746 TCTCCCCAAAGATGGAGTTTGGATGGCACTTCTCAAGAAGCAGCCCCGGATAGAACTCCA 36641805 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || |||| || || || || | | || || || |||||||| |||||| Sbjct 36641806 TGGCATCGATATCACCATATAGCTCTTCCAACTCAGCTGCCATCTCCTTCTCTCCT 36641861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716855723822080