Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Loxodonta_20africana_20[refseq_20GCF_5F000001905.1_202009-07-15] 2,352 sequences; 3,196,738,102 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq85 154 4e-32 seq93 145 2e-29 seq54 104 6e-17 >seq85 Length=6926877 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || | || || || || || ||||| ||||| || || ||| Sbjct 1866761 CAGATCTTCGTGAAGACCTTGACTGGGAAGACCATTACCCTTGAGGTAGA--GCCCAGCG 1866818 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| || ||||| ||||| |||||||| ||||||| Sbjct 1866819 ACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGC 1866878 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | | ||||| ||||| |||||||| ||||||||| | ||||| | || || ||| Sbjct 1866879 AGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGTACTCTGTCTGACTACAACA 1866938 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || |||||||| || Sbjct 1866939 TCCAGAAAGAGTCCACTCTGCATCTGGT 1866966 Score = 150 bits (166), Expect = 4e-31 Identities = 160/209 (77%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || |||||||| | || || ||||| |||||||| ||||| || || ||| Sbjct 1865849 CAGATCTTTGTGAAAACCTTAACGGGTAAAACCATCACCCTTGAGGTAGA--GCCCAGTG 1865906 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| || ||||| ||||| |||||||| ||||||| Sbjct 1865907 ACACCATCGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCTCCTGACCAGC 1865966 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| |||||||| ||||| ||| | || || | || || ||| Sbjct 1865967 AGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGACGGACGTACCCTGTCTGACTACAACA 1866026 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||| || || || || ||||| || ||| Sbjct 1866027 TCCAGAAGGAGTCCACTCTGCACCTGGTT 1866055 >seq93 Length=5582385 Score = 145 bits (160), Expect = 2e-29 Identities = 158/208 (76%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| || ||||| || ||| Sbjct 4490595 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTGGA--GCCCAGTG 4490538 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| || || ||||| ||||| |||||||| || ||||| ||||||| Sbjct 4490537 ACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTCCTGACCAGC 4490478 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | |||||| | || || ||| Sbjct 4490477 AGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACA 4490418 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||||| || || Sbjct 4490417 TCCAGAAAGAGTCGACCCTGCACCTGGT 4490390 Score = 145 bits (160), Expect = 2e-29 Identities = 164/217 (76%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| || || || || || || || || || |||||||| |||||||| Sbjct 4491285 AAAATGC---AAATCTTTGTAAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA- 4491230 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| |||||||||||||||| || ||||| ||||| |||||||| || |||| Sbjct 4491229 -GCCCAGTGACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCTC 4491171 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | |||||||| | || ||||| || || || ||||| ||||| || | |||||| | | Sbjct 4491170 CCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGACGGCCGTACTCTTTCTG 4491111 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || ||||| || || Sbjct 4491110 ACTACAACATCCAGAAGGAATCGACCCTGCACCTGGT 4491074 >seq54 Length=15836216 Score = 104 bits (114), Expect = 6e-17 Identities = 143/197 (73%), Gaps = 5/197 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 ||||| | | |||| || || | || || || |||||||| ||||| |||| ||| Sbjct 984646 CAAATCTACATGAAGACCCTGATGGGCAAGACCATCACCCTTGAGGTC--AAGCCCAGTG 984703 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCC-CTCCGGACCAG 178040 ||||||||||||| |||||| || || |||||||| || || |||| | || | |||| Sbjct 984704 ACACCATCGAGAATGTCAAAACCAAAATCCAGGACAAGGAGGGCATCCTCCCCTGCCCAG 984763 Query 178041 CAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAAC 178100 || || || || || || || ||||| || || ||||| | | ||| | || |||||| Sbjct 984764 CAGCGTCTGATTTTTGCAGGCAAACATCTGGAGGATGGCTGCAGTCTCTCAGAGTATAAC 984823 Query 178101 GTCCAAAAAGAATCAAC 178117 |||| ||| | || || Sbjct 984824 ATCCAGAAACAGTCCAC 984840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203694925560288