Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq347 134 1e-26 seq25 96.9 4e-15 >seq347 Length=3625835 Score = 134 bits (148), Expect = 1e-26 Identities = 404/613 (66%), Gaps = 13/613 (2%) Strand=Plus/Minus Query 16919 ACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAA 16978 |||| | ||| || ||| | ||| || | || ||||| || || | || || || Sbjct 2988807 ACTCTCTGCTCTGAAGGTTTGTGTAGCAGGTAGTTGAACATTAGGCAGGTAAAGTCACAG 2988748 Query 16979 TGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCT 17038 ||| | ||||| |||||| | |||||||| || |||||||| | || |||||| |||| Sbjct 2988747 TGTGAACCCTCATCTCTGTTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAATCCT 2988688 Query 17039 CGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGAT 17098 |||||| | || ||||||| || || || ||| |||||| || || || | Sbjct 2988687 TATTTCTTGAGGCAGAATATCGATGCAAAAGAACCAAGAAAGAAGATGTT-TCTAC---T 2988632 Query 17099 GCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACC 17158 ||||| || | | | || || || || ||||||| | |||||| | || Sbjct 2988631 GCAAAAGCTACAACATGCTCTCTATA-GTAGCTTCTTTGTCCCCAATCCAATGTAAGGCC 2988573 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATA--ATTTCTCTT 17216 || || || | | ||||| ||| ||| |||| |||||| | || | | ||| ||| Sbjct 2988572 CAATCTTCTCTCTTCTTTACACAAGGAATCATTTCAATGGCCCTGAAGAGAAATTCCCTT 2988513 Query 17217 TTTCCTGTAGGTCGATTA-TATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATG 17275 | ||| ||| ||| | | || || | || || || |||||||| || |||| Sbjct 2988512 T--CCT-TAGAATCTTTAGTGTCAGTGTCAGTAAGGAGACTATACATTTCAGAACATATG 2988456 Query 17276 TTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACG 17335 || |||| ||| || ||||| | || ||||| | |||||| | || |||||||| | Sbjct 2988455 TTTTCCAAGGCAATTTGAAAGTCATAGAAGCAGCAGGCTTCTGTAATCTGAACTTCTTGG 2988396 Query 17336 TAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAAT 17395 | | | | | || ||||| ||| ||||| || || | || || || | || Sbjct 2988395 CTAAGTGCTCCATCAAG-TTTTCTGTCAGCATGCCATCACTTGTTGCAAAGAA-GTCAGA 2988338 Query 17396 ATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTG 17455 | ||| || |||||||| | || || || | | ||||| || | |||||| Sbjct 2988337 ACATGTGATATAAAATATTTCTTCTCAGGCAGGAGGGCTCCCCAGTGCTGAATGTCTTTG 2988278 Query 17456 GATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAA 17515 || | |||||| || || | || ||||| |||| | || || |||||||| | |||| Sbjct 2988277 GAAAGATCCACCTCCTCAGCTGTACAAAAGGAAGCCTCAGCTTTCTTATACATTTGCCAA 2988218 Query 17516 ATATCATTGTATT 17528 ||||||| ||||| Sbjct 2988217 ATATCATGGTATT 2988205 >seq25 Length=20042899 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || ||||| ||||||||||| Sbjct 6229052 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATTAATCCTCGTTTCT 6229111 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | |||||| | Sbjct 6229112 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCTACTGCTGCAAAGG 6229171 Query 17106 C 17106 | Sbjct 6229172 C 6229172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517399982076120