Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq168 432 3e-116 seq4782 260 1e-64 seq34 147 2e-30 seq107 102 6e-17 seq30 86.0 5e-12 >seq168 Length=7504001 Score = 432 bits (478), Expect = 3e-116 Identities = 441/573 (77%), Gaps = 7/573 (1%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||| | |||||| |||||||||||||||||||||||||||| |||||||| || ||| Sbjct 3980603 TATTATTCATTCTTTTCATATACTTCAAATTTGTACTTAATACCATTCTCTTCCTGGACA 3980662 Query 4027 TTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGA 4086 | |||| |||||| ||| |||||| | |||||| ||||||| || ||||| ||| || Sbjct 3980663 TCAGAAGGAACACCTGGGTATTCTGGGAGAAGTTTATATTTCTGTAAATCAATTTCAGGG 3980722 Query 4087 AAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCAT 4146 ||||| |||||| || ||| || ||||||||||| |||||||||||| |||||| || | Sbjct 3980723 AAAAATATGTCACTTTTAAATTCCTGCATGATCCTTGTCACAAACAGTCTAAGATGGCCT 3980782 Query 4147 GGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACT 4206 || | ||||||||| || || |||||||| |||||||||||||| ||||| || ||| Sbjct 3980783 GGCTGGTCCATAGCTTCCTTGTAGACAGAACTGCCTCCAATTATCCAAACCATTTCCACT 3980842 Query 4207 TTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAA 4266 |||||| ||| |||||| || || |||||||||| |||||||| | ||| || || | | Sbjct 3980843 TTATTTCCTATTTCTGGTTGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCGAGA 3980902 Query 4267 AAATGAGCTCTATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCT 4326 |||||||||| ||| | | ||||| ||||| | |||||||| | ||||||||| || Sbjct 3980903 AAATGAGCTCCTTGTAGGGGTTCCTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCT 3980962 Query 4327 TTTAAAGGCCGGTTCTTCTCAGGAATTGAGAACCA-AGTCTTTTTACCCATAATCACTAA 4385 || ||||| | | ||||| | ||| |||||||| ||||| ||||||||||||| | Sbjct 3980963 TTCAAAGGTCTATGCTTCTTGGAAATGGAGAACCAGGGTCTTCCTACCCATAATCACCAC 3981022 Query 4386 ATTCTGTTTATCTGGTAC---AGAAGAT---GTAGTAGTCATTCTTTGGAAATGTTTAAA 4439 |||||||||| | ||| ||||||| || || ||||||||||| |||| || || Sbjct 3981023 ATTCTGTTTACCATCTACGGAAGAAGATGTGGTCGTGGTCATTCTTTGAAAATACTTTAA 3981082 Query 4440 ATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGC 4499 |||||| | || ||||| | | || || | |||| ||||||||||| || | Sbjct 3981083 TTCATTCCTGAGCAGGGGCCAGGATAGGTCTCCATTCTTGCTGATGCCCATGTTCTGGGG 3981142 Query 4500 TACAGCAACAATGCAGTTTAGTGCTTGAACCAT 4532 |||| | || |||||||| |||||||| Sbjct 3981143 CACAGTGATGATACAGTTTAGCTGATGAACCAT 3981175 >seq4782 Length=8655 Score = 260 bits (288), Expect = 1e-64 Identities = 269/347 (78%), Gaps = 5/347 (1%) Strand=Plus/Minus Query 3952 TGTAAAAGACATTTGTATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTT 4011 || |||| | ||| | ||| | |||||| ||||| |||| ||||||| ||||||| | | Sbjct 5792 TGGAAAATGCCTTTATGTTACTCATTCTTTTCATACACTTAAAATTTGCACTTAATGCCT 5733 Query 4012 TTCTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCT 4071 ||||||| || |||| ||||||||| | ||| |||||| | |||||| ||||||||| Sbjct 5732 TTCTCTTTCTGGACATCAGAAAGAACCCCTGGGTATTCTGGAAGAAGTTTATATTTCTCT 5673 Query 4072 AGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAAC 4131 | ||||| ||| |||||||| |||| | || || || ||||||| || ||||| ||| Sbjct 5672 AAATCAATTTCAGGAAAAAACATGTCCCTTTAGAATTCCTGCATGA--CT-GTCACCAAC 5616 Query 4132 AGTTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATC 4191 ||| |||||| || ||| | ||| ||||| || || |||||||| |||||||||||| Sbjct 5615 AGTCTAAGATGGCCTGGCTGGTCCATGGCTTCCTTGTAAACAGAACTGCCTCCAATTATC 5556 Query 4192 CAGACCATGTCTACTTTATTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCT 4251 | || || |||||||||||| ||| |||||| || || |||||||||| |||||||| Sbjct 5555 TAAAC-ATTTCTACTTTATTTCCTATTTCTGGTTGCTCAATAAGTTTTAAGGCATCATCC 5497 Query 4252 AAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCTTTAGTTC 4298 | || ||||| | ||||||||||| ||||| | | ||| ||||| Sbjct 5496 AGACCTTTAGCAAGAAAATGAGCTCCCTGTGG-GGGTTCTTGAGTTC 5451 Score = 114 bits (126), Expect = 9e-21 Identities = 174/244 (71%), Gaps = 8/244 (3%) Strand=Plus/Minus Query 4285 AGCTCCTTT-AGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTT 4343 ||||||||| ||||| | |||||||| | ||||||||| |||| ||| | ||||| Sbjct 5263 AGCTCCTTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAACATCTATTCTT 5204 Query 4344 CTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTT---TATCTGG 4400 |||||||| || ||| | ||| | ||||||||||||| ||||||| || | ||| Sbjct 5203 CTCAGGAAGGGAAAACTAGGTCATCCTACCCATAATCACCAAATTCTTTTCAATTTCTAA 5144 Query 4401 TACAGAAGAT---GTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTGG 4457 | ||||| | || | |||||||||||| |||| || || |||||| || || Sbjct 5143 TGAAGAAGTTATGGTTGCAGTCATTCTTTGAAAATACTTGAATTCATTCCAGAGCGGGGG 5084 Query 4458 CCA-AGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGT 4516 ||| ||| | | || | || | |||||||| || || | |||| |||| ||||| Sbjct 5083 CCAGAGGTAGATCTCCATTCTTTCTGATGCCCATCTTCTGGGACACAGTGACAAGGCAGT 5024 Query 4517 TTAG 4520 |||| Sbjct 5023 TTAG 5020 >seq34 Length=18184965 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 26957 GGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTTCTCTAGCCTAAATGAATTAGG 27016 ||| || || || ||||| || |||||||| ||||||||||| |||| || || ||| Sbjct 2073957 GGGGGTGACACAGGTGCAACCCACAGTCACCAGCATCTTCTCCAGCCGGAAGGAGCGAGG 2074016 Query 27017 GCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTGTTGGATAGGGACTGAGTTCAT 27076 ||| || || | | | | || || || |||||||| ||||| ||||| |||||||| Sbjct 2074017 GCAATGTGCATTCTCCCTTCTCAGGACCAGGATCTCTTGCTGGATGGGGACGGAGTTCAT 2074076 Query 27077 GTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACACTTTGCTTCCCA 27136 |||| || | ||||| |||||||| ||||| || |||||| || | || ||||| Sbjct 2074077 GTGGAGGTTCTCCTTCCCGTCAGCATTGACACAGCCCTTGTAGCGGCAGCTAGCCTCCCA 2074136 Query 27137 AATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 |||||||||||| ||||| || | || |||||||| Sbjct 2074137 AATCACAGAGGGGTATCTCTCGGGGTCCTCATTGCG 2074172 >seq107 Length=10112982 Score = 102 bits (112), Expect = 6e-17 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 |||||| ||||||| || ||||| ||| || ||||| ||||||| |||||| || ||||| Sbjct 6803722 AAGTTTATATTTCTGTAAATCAATTTCAGGGAAAAATGTGTCACTTTCAAATTCCTGCAT 6803781 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 |||||| ||||| |||||| |||||| || ||| | ||| ||||| || Sbjct 6803782 GATCCTTGTCACGAACAGTCTAAGATGGCCTGGCTGGTCCATGGCTTCCTT 6803832 Score = 100 bits (110), Expect = 2e-16 Identities = 81/98 (83%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || |||||||| |||||||||||||| ||||| || ||||||||| ||| |||||| Sbjct 6808731 TTGTAGACAGAACTGCCTCCAATTATCCAAACCATTTCCACTTTATTTCCTATTTCTGGT 6808790 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGC 4262 || || |||||||||| |||||||| | ||| || || Sbjct 6808791 TGCTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGC 6808828 Score = 100 bits (110), Expect = 2e-16 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | ||||||||| |||| ||||| | | ||||| || Sbjct 6826559 CTTGAGTTCTCTACTGAGAACTAAATTAATTCTATCTTTCAAAGGTCTATGCTTCTTGGG 6826618 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCTG 4399 ||| |||||||| ||||| ||||||||||||| | |||||||||| ||| Sbjct 6826619 AATGGAGAACCAGGTCTTCCTACCCATAATCACCACATTCTGTTTACCTG 6826668 Score = 96.9 bits (106), Expect = 3e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 3967 TATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACA 4026 ||||| | |||||| ||||||||||||||||| |||||||||| |||||||| || ||| Sbjct 6796434 TATTATTCATTCTTTTCATATACTTCAAATTTATACTTAATACCATTCTCTTCCTGGACA 6796493 Query 4027 TTAGAAAGAACACTTGGATAT 4047 | ||||||||||| ||| ||| Sbjct 6796494 TCAGAAAGAACACCTGGGTAT 6796514 >seq30 Length=19208098 Score = 86.0 bits (94), Expect = 5e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 ||||||||||||| || ||||||||||||||||| ||||| || || || | ||||||| Sbjct 15106153 CTTTATATTCTGCCCCAAAATGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCTCCTA 15106094 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | |||| | | || || || | || ||||| || || ||||| |||||||| | Sbjct 15106093 CTTCTCGGGTGGAGAATCCCAGGCTGTCCAAAAAGTCTCGGGACCCATTGGCATCCCAGA 15106034 Query 102153 TGTGCACGCC 102162 | | ||| || Sbjct 15106033 TCTTCACTCC 15106024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361152098522759