Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq20 311 1e-79 seq498 228 1e-54 seq72 93.3 5e-14 >seq20 Length=21249055 Score = 311 bits (344), Expect = 1e-79 Identities = 408/562 (73%), Gaps = 16/562 (3%) Strand=Plus/Minus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||||| ||||| | ||||| | | | ||| || ||| ||||||||||||| || Sbjct 14499516 AGCAGGGCCTTAATGTCAGCCTCCATGTCGATGGTTGGGAAGCAGTGGCTGTACCTGAGC 14499457 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| | || | |||| ||||||||| |||||||| || || || |||| | Sbjct 14499456 ACAGGCACACTGTTGCGGTCTACCAGGAACTTCTCAAAGTTCCAAGCAACATCATTGCTG 14499397 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGC 83234 ||||||||||||||| | ||| ||||||| ||| || ||| | | ||||| Sbjct 14499396 CACACTGGAGACCAGATGACTAGCCTGGGGTCGGTCATAAG--TGCAACGGCTTGGTCGC 14499339 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | | ||| ||||||||||| | |||||||| ||||| || || || ||| || || | Sbjct 14499338 TGGACGCAGGCAGGGCCTCCCTCAGGAAGGCAAAGAGAGGGTGCACCAGTGCGCCATTCA 14499279 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 ||||||| |||||||| || | ||||| |||||||| || | || || | || | || Sbjct 14499278 CCTCGCAATTCTCGAAAAGTGTGAAGTTAGGCTCGAACCCACTGCCTGGTGGCACATACT 14499219 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACG 83414 | |||||| ||||| || | || |||||||||||| || || |||||| Sbjct 14499218 TGAGGGAATTTAAGATTTCTTCGTTTCTGGCGTTTTCCTGATGCCCAAACTGG------- 14499166 Query 83415 GGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAG 83474 || |||||| || || ||| ||| || |||||||||||||| || |||||||||| Sbjct 14499165 --AAGCCAAGCG--ACGAGGCCCTGAGGGCC-AGGCGCCGCTGCAGATCTTTCATCTGAG 14499111 Query 83475 TGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGCAAGACCCGGC 83534 |||| |||||||||||| | |||||||| ||||| || | ||||||||||| ||| ||| Sbjct 14499110 TGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCACATCCTCGATGAGCAGCACCTGGC 14499051 Query 83535 CCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGCGTGCTGAGAAGGCGT 83594 || | | | || | ||| ||||| ||||| || | | |||| | || |||||||| | Sbjct 14499050 CCTGCAGCGACCCCAGGCTTACAGGCTCTCCGCCTGCCAGCGGGTGCGCAGAGAAGGCAT 14498991 Query 83595 ACACAGATCTGGTCTCTGCCGC 83616 || | || || | ||||||| Sbjct 14498990 ACCCTGAGCTAGGGGCTGCCGC 14498969 >seq498 Length=2038533 Score = 228 bits (252), Expect = 1e-54 Identities = 255/339 (75%), Gaps = 4/339 (1%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||||||||||||| | ||||| | | | ||| || ||||| |||||||||||||| Sbjct 1343800 AGCAGGGCCTCGATGTCAGCCTCCATGTCGATGGTTGGGAAGCGGCGGCTGTACCTGCGC 1343859 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 || ||| ||||| |||||| |||||||| |||||||||| | ||| |||||| Sbjct 1343860 ACAGGCACACCGTCGCGGTCCACCAGAAACTTCTCAAAGTTCCAGGAGATGTCATTGCGG 1343919 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATG--TCGTCGC 83234 ||||||||||||||| | |||| ||| || ||| | |||| | ||||||| Sbjct 1343920 CACACTGGAGACCAGATGACAAGCTTGGGATCAGTCATAA--GTGCAACGGCATCGTCGC 1343977 Query 83235 TAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGA 83294 | ||||| ||||||||||| || |||||||| ||||| || || ||| || || || | Sbjct 1343978 TGGGCGCAGGCAGGGCCTCCCGCAGGAAGGCAAAGAGAGGGTGCGCCTGCGCGCCATTCA 1344037 Query 83295 CCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCT 83354 |||||||||||||||| || | ||||| |||||||| || || || || |||| || Sbjct 1344038 CCTCGCACTTCTCGAAAAGTGTGAAGTTAGGCTCGAACCCACCGCCTGGTCGCACGTACT 1344097 Query 83355 TCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 | ||| || || ||| || | || | ||||||||||| Sbjct 1344098 TGAGGCAATTCAGGATTTCTTCGTTTTTGGCGTTTTCCT 1344136 Score = 203 bits (224), Expect = 4e-47 Identities = 183/230 (80%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||||| || |||| Sbjct 1344408 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGGCCCCGAGGACCGAGGC 1344467 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| ||||||||||||||||| |||||||||||| | |||||||| ||||| | Sbjct 1344468 GCCGCTGCAGATCGTTCATCTGAGTGTAGTCCCGGACCGTGGTGCCTCAGAGCGACGCCA 1344527 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||||||||||| ||| |||||| | | || | ||| ||||| || || || | Sbjct 1344528 CGTTCTCGATGAGCAGCACCTTGCCCCGCAGCGACCCCAGGCTTACAGGGTCCCCGCCTG 1344587 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCA 83620 | |||||| || |||||||| ||||| || | | ||||||| ||| Sbjct 1344588 CCAGCGGGCGCGCAGAGAAGGCATACACTGAGCGAGGGGCTGCCGCCGCA 1344637 >seq72 Length=12434827 Score = 93.3 bits (102), Expect = 5e-14 Identities = 200/290 (69%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| |||||| || |||| | ||| || ||| ||| ||||||||| || ||| Sbjct 6753144 GCAGCTGCGCGGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCCTCCCGCCTGC 6753202 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 ||||| || | || || |||||||| || |||||||||| | ||| | ||||||| Sbjct 6753203 TCGTGCACCTCTTCCCCGAGCTCTTCACCCACGAGAACCTGCGTAAGCAGTACAACTGCA 6753262 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTC---CGGCAC 50584 |||||| |||||||| |||| | || ||| ||| | | |||| || ||| Sbjct 6753263 GTGGCTCCCTGGGCAAGAAGCAGT-TGGATCCGTCCCGCAT---CAAGCTCATTCGCCAC 6753318 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || ||||||||||| |||| ||| ||||| || || |||| ||||| || Sbjct 6753319 TACGTGCAGTTGCTCTACCCACGGGCCAAAAACGACCGTGTCTGGACTCTGGAGTTCGTG 6753378 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||| ||||||||||| ||||| | |||||| || |||||| Sbjct 6753379 GGCAAGCTGGATGAGCGCTGCCGACGCCG--GGACACGGAGCAGAGGCGC 6753426 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608625507410360