Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq48 127 2e-24 seq139 109 5e-19 seq662 96.9 3e-15 seq666 89.7 4e-13 seq368 82.4 6e-11 seq113 82.4 6e-11 >seq48 Length=15315231 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 ||||||||| ||| | ||| |||| |||| ||||||||| || || ||||| ||||| | Sbjct 866225 TTCCCCCTCTCAGACGGAGAACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAG 866166 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | || ||||||||||| || ||| | || | ||||||||||| | Sbjct 866165 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAG 866106 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | ||||||||||| ||||||| || || | | | || |||| |||||| Sbjct 866105 GGATACCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 866046 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | |||||||||||| || || | || || || || || |||||| Sbjct 866045 CTTCAAGGGTAATGGTCTTACCAGTCAGGGTCTTCACGAAAATCTGCATT 865996 Score = 123 bits (136), Expect = 2e-23 Identities = 163/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 ||||||||| ||| | || |||| |||| ||||||||| || || ||||| ||||||| Sbjct 865997 TTCCCCCTCTCAGGCGAAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCCG 865938 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| | | || ||||||||||| |||||| | || | ||||||||||| | Sbjct 865937 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCAGGAG 865878 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||| ||||| ||||||| || || | | | || |||| |||||| Sbjct 865877 GGATGCCTTCTTTGTCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTA 865818 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTG 21172 ||| | ||| || ||||| ||||| || || || || || || || Sbjct 865817 CTTCAAGGGTGATTGTCTTACCGGTCAAGGTCTTCACGAAGATCTG 865772 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| ||||||||| || || ||||| ||||| | |||||| | | || Sbjct 866997 AGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGTCCATCT 866938 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||||||| || ||| | || | ||||||||||| || | ||||||||| || Sbjct 866937 TCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTATCT 866878 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | | | || |||| ||||| ||| | ||| || ||| Sbjct 866877 TGGATCTTTGCCTTGACATTCTCAATGGTGTCACTAGGCTCTACTTCAAGGGTGATTGTC 866818 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || ||||| | || || || || || |||||| Sbjct 866817 TTACCGGTCAGGGTCTTCACGAAGATCTGCATT 866785 >seq139 Length=8626845 Score = 109 bits (120), Expect = 5e-19 Identities = 149/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || || || ||||| | || || || | || |||| ||| Sbjct 1931008 TGCAGGGTCGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAACTGC 1930949 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||||||||| ||| | |||||| || || |||||| Sbjct 1930948 TTGCCTGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTTATCTTGGATCTTA 1930889 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| ||||||| ||||||| |||| ||| ||||||||||| ||| Sbjct 1930888 GCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCTGTT 1930829 Query 21153 AACGTTTTGACAAATATTTGCATTTTGA 21180 | || || || || || ||||| |||| Sbjct 1930828 AGGGTCTTTACGAAGATCTGCATCTTGA 1930801 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || ||||| ||||| | || || || | || |||||||| Sbjct 1931464 TGCAGGGTTGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCATCTTCCAGCTGC 1931405 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||| ||||| || | ||||| || || |||||| Sbjct 1931404 TTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTG 1931345 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| ||||||| ||||||| |||| ||| ||||||||||| || Sbjct 1931344 GCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1931285 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 1931284 AGGGTCTTCACAAAGATCTGCAT 1931262 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || ||||| || || || || ||||| | || || || | || |||||||| Sbjct 1931236 TGCAGGGTTGACTCTTTCTGGATATTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 1931177 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 ||||| ||| | || || ||||| ||||| || | ||||| || || |||||| Sbjct 1931176 TTGCCTGCAAAGATGAGCCTCTGTTGGTCAGGAGGAATACCTTCTTTATCCTGGATCTTG 1931117 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||||| | ||| ||||||| ||||||| |||| ||| ||||||||||| || Sbjct 1931116 GCCTTCACATTCTCGATGGTATCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTC 1931057 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 1931056 AGGGTCTTCACAAAGATCTGCAT 1931034 >seq662 Length=1284721 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 20961 CTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCG 21020 || || |||| |||| |||||||| || || |||| ||||| | |||||| | Sbjct 539889 CTCAGGACCAAGTGCAGCGTGGACTCTTTCTGGATGTCGTAGTCAGACAGGGTACATCCA 539948 Query 21021 TCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTG 21080 || ||||||||||| || ||| | || | ||||||||||| || | ||||||||| Sbjct 539949 TCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTA 540008 Query 21081 TCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATG 21140 || ||||||| || || | | | || |||| |||||| ||| | | ||||| Sbjct 540009 TCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGTTAATG 540068 Query 21141 GTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||||| | ||| | || || ||||| || |||||| Sbjct 540069 GTCTTACTGGTCAGGGTCTTCACAAAGATCTGCATT 540104 >seq666 Length=1230470 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || || | ||||| || |||| || || ||||| ||||| | || | || | || Sbjct 1199726 AGAACAAGATGCAGGGTCCACTCTTTCTGGATGTTGTAGTCAGAAAGAATGCGGCCATCT 1199667 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 || |||| |||| ||| | || || |||| |||||| ||| | |||| | | || Sbjct 1199666 TCTGGCTGCTTGCTGGCAAAGATGAGCCTCTTCTGGTCAGGGGGAATGCCTCCTTCATCC 1199607 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| ||||| | ||| |||||| ||||||| | |||| ||| |||||| Sbjct 1199606 TGGATCTTAGCCTTCACATTCTCGATGATATCACTGGGCTCCATCTCCAGGGTGATGGTC 1199547 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGA 21180 ||||| |||| || || ||||| || ||||| |||| Sbjct 1199546 TTGCCTGTTAGGGTCTTTACAAAGATCTGCATCTTGA 1199510 >seq368 Length=3467158 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||| || || ||||| || || | || | || | ||||| |||| | Sbjct 925347 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCT 925288 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 |||||| || |||| || | ||||||||| || | ||| |||||| | ||| || Sbjct 925287 TTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTG 925228 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 ||| || | | | || |||| ||||||| || | || ||||||||||| | Sbjct 925227 GCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTC 925168 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 || || || ||||| || ||||| Sbjct 925167 AAGGTCTTCACAAAGATCTGCAT 925145 >seq113 Length=9792114 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/222 (68%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 ||||||| ||| |||||||| || || |||| | || | || || ||| | ||| Sbjct 4493431 AGCACCAGGTGCGTGGTGGACTCTTTCTGTGTGTTGTCATCTGAGAGTGTGTGGCCATCC 4493490 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||| ||| ||||| || |||| |||| ||||||||| ||| | ||| |||||||| Sbjct 4493491 TCCAGTTGTGTGCCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCT 4493550 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||| || ||| || | || || |||| ||| || | | || |||||| Sbjct 4493551 TGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATGGTC 4493610 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT-TTTGAATCT 21184 ||||| || | || || ||||| || | ||| | || |||| Sbjct 4493611 TTGCCCGTCAGGGTCTTCACAAAGATCTACATCTCTGCATCT 4493652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422143362293444