Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq48 125 7e-24 seq662 100 3e-16 seq139 100 3e-16 seq113 98.7 1e-15 seq368 95.1 1e-14 >seq48 Length=15315231 Score = 125 bits (138), Expect = 7e-24 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 40693 CAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGAC 40752 || || ||||| || || | || || || || |||||| | || || || ||| ||| Sbjct 865772 CAGATCTTCGTGAAGACCTTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCCAGTGAC 865831 Query 40753 AGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAA 40812 | | | | | |||||| ||| || | |||||||| |||||||| | |||||||| Sbjct 865832 ACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAAGAAGGCATCCCTCCTGACCAGCAG 865891 Query 40813 CGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATC 40872 | | |||| ||||| ||||||||||| || | ||||||||| |||||||||||| Sbjct 865892 AGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTGTCGGACTACAACATC 865951 Query 40873 CAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||| |||| ||||| || || | ||| |||| || || Sbjct 865952 CAGAAAGAGTCCACTCTGCACCTGGTCCTTCGCCTGAGAGGGGG 865995 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || ||||| ||| | || || || ||| Sbjct 865996 AATGCAGATTTTCGTGAAGACCCTGACTGGTAAGACCATTACCCTTGAAGTAGAGCCCAG 866055 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | ||||| || || ||||| | ||||| Sbjct 866056 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGTATCCCTCCTGACCA 866115 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | ||||||||| |||||||| Sbjct 866116 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 866175 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | || |||| || || Sbjct 866176 CATCCAGAAAGAGTCCACTCTGCACCTGGTTCTCCGTCTGAGAGGGGG 866223 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || || |||||| | || || || | | Sbjct 866785 AATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACAATCACCCTTGAAGTAGAGCCTAG 866844 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | || || || |||||||| | ||||| Sbjct 866845 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 866904 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | || ||||| |||||||| Sbjct 866905 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGTACCCTGTCTGACTACAA 866964 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| | || ||||||||||||| || Sbjct 866965 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 867012 >seq662 Length=1284721 Score = 100 bits (110), Expect = 3e-16 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || || || || || | || ||||| | | | || || || ||| Sbjct 540104 AATGCAGATCTTTGTGAAGACCCTGACCAGTAAGACCATTAACCTTGAAGTAGAGCCCAG 540045 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| ||| || | || || || |||||||| | ||||| Sbjct 540044 TGACACCATTGAGAATGTCAAGGCAAAGATCCAAGATAAGGAAGGCATCCCTCCTGACCA 539985 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| || || ||||||||||| || | | ||||| |||||| | Sbjct 539984 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGATGTACCCTGTCTGACTACGA 539925 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGG 40913 ||||||||| ||| |||||||||| | || || |||||||||| Sbjct 539924 CATCCAGAAAGAGTCCACGCTGCACTTGGTCCTGAGCTTGAGGGG 539880 >seq139 Length=8626845 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 1931262 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931321 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | || ||||| || || || | ||||| Sbjct 1931322 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931381 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | ||||||| || ||||| |||||||| || | || || || ||||||||| Sbjct 1931382 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 1931441 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||| ||| | || ||||| || || | ||| ||||||| ||| Sbjct 1931442 ATCCAGAAAGAGTCAACCCTGCACCTTGTTCTTCGCCTGAGGGGTGGC 1931489 >seq113 Length=9792114 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||| | || || || || || || |||||||| |||||||| || | || || ||| Sbjct 4493642 ATGTAGATCTTTGTGAAGACCCTGACGGGCAAGACCATCACTCTCAAGGTTGATCCCAGT 4493583 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| | ||||| | ||||| |||||||||||| | |||||| Sbjct 4493582 GACACCATCAAGAATGTCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCCCCTGACCAG 4493523 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| || | | ||||| ||| ||||| || | | ||| ||| || ||||| Sbjct 4493522 CAGCGACTGATTTTTGTGGGCACACAACTGGAGGATGGCCACACACTCTCAGATGACAAC 4493463 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGC 40903 | ||||| ||| |||| ||| || ||| ||| Sbjct 4493462 ACACAGAAAGAGTCCACCACGCACCTGGTGCTGC 4493429 >seq368 Length=3467158 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | | |||||| |||||||| | || || || ||| Sbjct 925145 ATGCAGATCTTTGTGAAGACCTTGAAGGGCAAGACCATCACTCTTGAGGTGGAGCCCAGT 925204 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | || | | |||| | ||||| | | ||| |||||||| || | |||||| Sbjct 925205 GACACCATGGAGAATGTCAAAGCCAAAATCCAAGCCAAGGAGGGCATTCCTCCTGACCAG 925264 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | | ||||||| |||| || || | || | ||| || |||||| Sbjct 925265 CAGCGTCTGATTTTTGAGGGCAAAGAGCTAGAGGATGGCCGTATTCTCTCAGATTACAAC 925324 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||| ||| |||| ||||| | |||| Sbjct 925325 ATCCAGAAAGAGTCCACCCTGCACCCAGTG 925354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515074236637840