Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq139 100 4e-16 >seq139 Length=8626845 Score = 100 bits (110), Expect = 4e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || ||||||| ||||||||||| || || || | ||| | || | | | Sbjct 1930806 ATGCAGATCTTCGTAAAGACCCTAACAGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1930865 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || |||||||||||||| || || ||||| || Sbjct 1930866 GATACCATCGAGAATGTGAAGGCTAAGATCCAAGATAAAGAAGGCATTCCCCCTGACCAG 1930925 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||||| || || || || ||| | || || | || || ||| Sbjct 1930926 CAGAGGCTCATCTTTGCAGGCAAGCAGTTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1930985 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || |||| | || | ||| | | |||||||| Sbjct 1930986 ATCCAGAAAGAGTCGACCCTGCACCTTGTCCTTCGTCTGAGGGGTGGTAT 1931035 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | | | Sbjct 1931034 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931093 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || || |||||||||||||| || ||||| ||| Sbjct 1931094 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931153 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||||| || || | || ||| | || || | || || ||| Sbjct 1931154 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAT 1931213 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| ||||| |||| | || | ||| | | |||||||| Sbjct 1931214 ATCCAGAAAGAGTCAACCCTGCACCTTGTCCTTCGTCTGAGGGGTGGTAT 1931263 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| || || ||||| || || || | ||| | || | | | Sbjct 1931262 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 1931321 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | || || || || |||||||||||||| || ||||| ||| Sbjct 1931322 GATACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAAGAAGGTATTCCTCCTGACCAA 1931381 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || |||||||| || || | || ||| | || || | || || || Sbjct 1931382 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCTGACTACAAC 1931441 Query 124719 ATTCAAAAAGAATCAACTTTGCA 124741 || || ||||| ||||| |||| Sbjct 1931442 ATCCAGAAAGAGTCAACCCTGCA 1931464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755243443011200