Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq48 102 7e-17 seq368 98.7 9e-16 seq113 89.7 4e-13 >seq48 Length=15315231 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 866205 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 866146 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || ||||| || || ||||||||| Sbjct 866145 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCAGGAGGGATACCTTCCTTGTCTTGG 866086 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | || | |||||| || ||| || || | ||| | || || Sbjct 866085 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCTACTTCAAGGGTAATGGTCTTA 866026 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||||||||| Sbjct 866025 CCAGTCAGGGTCTTCACGAAAATCTGCAT 865997 >seq368 Length=3467158 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || ||||||||||| | | | || |||||| |||| ||| || Sbjct 925341 GTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCTTTGCCC 925282 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 | | || ||||||||||| || ||||| |||||||||||| || ||||| ||| Sbjct 925281 TCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTGGCTTTG 925222 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| ||||| | || | || ||||| ||| || Sbjct 925221 ACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTCAAGGTC 925162 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 925161 TTCACAAAGATCTGCAT 925145 >seq113 Length=9792114 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 || ||||| ||| | || |||||||| || |||||| ||| | | |||| | | | Sbjct 4493430 CAGCACCAGGTGCGTGGTGGACTCTTTCTGTGTGTTGTCATC--TGAGAGTGTGTGGCCA 4493487 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| || ||| | || | | || || |||||||| || || || |||||||||||| Sbjct 4493488 TCCTCCAGTTGTGTGCCCACAAAAATCAGTCGCTGCTGGTCAGGGGGGATGCCCTCCTTG 4493547 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| ||||| ||| || | | || |||||| || || |||| || || | Sbjct 4493548 TCTTGGATTTTGGCTTTGACATTCTTGATGGTGTCACTGGGATCAACCTTGAGAGTGATG 4493607 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| || || ||||| |||| ||| Sbjct 4493608 GTCTTGCCCGTCAGGGTCTTCACAAAGATCTACAT 4493642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433711387984228