Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq11 104 4e-17 >seq11 Length=25647438 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 51901 TGGTTGTACTATATATCCAAAGGGATAGAATACTTGGATACGGTATTTTTCATACTTAGG 51960 |||| ||||| | |||| ||||| | ||||| ||||| || |||||||| || || ||| Sbjct 21906530 TGGTGGTACTTTGTATCTAAAGGAGTGGAATATTTGGACACAGTATTTTTTATCCTAAGG 21906589 Query 51961 AAAAAATTTAATCAGGTTAGTTTTCTACACGTATATCATCATTTTACTATGTTTACTCTA 52020 || ||| || || || ||| || || ||||||||||||| ||| |||||||| | Sbjct 21906590 AAGAAAAACAACCAAGTCTCTTTCCTTCATGTATATCATCATTGTACAATGTTTACATTG 21906649 Query 52021 GGATGGATAGGTATTAAATGGTTTGCTGGAGGTCA 52055 | ||||| || ||||||||| | || || || || Sbjct 21906650 TGGTGGATTGGAATTAAATGGGTGGCAGGGGGACA 21906684 Score = 100 bits (110), Expect = 5e-16 Identities = 104/133 (78%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116 |||||||||||||| ||||| ||||| ||||||||||| || |||||| | || ||||| Sbjct 21908363 GCATTTTTTGGAGCCCAGCTGAATTCCTTTATCCATGTGATCATGTACTCATACTATGGG 21908422 Query 52117 ATGGCCGCTTGTGGTCCTATG--TTCAGAAAGTATCTATGGTGGAAACGTTATCTTACTA 52174 | | || | |||||| ||| ||||| |||||||| |||||||| || || || || | Sbjct 21908423 TTAACTGCATTTGGTCC-ATGGATTCAG-AAGTATCTCTGGTGGAAGCGATACCTGACCA 21908480 Query 52175 TAATGCAGTTGGT 52187 | | ||| |||| Sbjct 21908481 TGTTACAGCTGGT 21908493 Score = 89.7 bits (98), Expect = 9e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244 ||| ||||||||| | | || ||||| || || |||| ||| | |||||||| || Sbjct 21911196 GGTTCAGTTCCATGTGACCATTGGACACACAGCATTGTCTCTTTGGACTGATTGCCCCTT 21911255 Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304 ||||||||||| || ||| | | ||| |||| | || || |||||||| || ||| Sbjct 21911256 CCCAAAATGGATGCACTGGGCTCTAATTGTCTACGCCATCAGCTTCATATTTCTCTTTCT 21911315 Query 52305 TAACTTCTATTTTAGAACATACAA 52328 |||||||||| || | ||||| || Sbjct 21911316 TAACTTCTATGTTCGGACATATAA 21911339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 922937047040360