Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Orycteropus_20afer_20afer_20[refseq_20GCF_5F000298275.1_202012-09- 20] 22,509 sequences; 4,444,080,527 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq330 104 3e-17 seq684 102 9e-17 seq430 100 3e-16 seq48 100 3e-16 seq44 98.7 1e-15 seq368 96.9 4e-15 seq253 95.1 1e-14 seq127 95.1 1e-14 seq12 89.7 6e-13 seq6 89.7 6e-13 seq107 86.0 7e-12 seq580 82.4 9e-11 seq72 82.4 9e-11 seq5 82.4 9e-11 >seq330 Length=3944073 Score = 104 bits (114), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2055038 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2054979 Query 60125 ATACTACCGAGGATTGA 60141 |||||| |||||| ||| Sbjct 2054978 ATACTAACGAGGAATGA 2054962 >seq684 Length=1121939 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 416754 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 416695 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 416694 TATACTAACGAGGA 416681 >seq430 Length=2872292 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||||||||||||||||||| ||||||||||||| Sbjct 988468 CTCCCCGGCGGGGAATCGAACCCCAGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 988409 Query 60126 TACTACCGAGGATTG 60140 ||||| |||||| || Sbjct 988408 TACTAACGAGGACTG 988394 >seq48 Length=15315231 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 851820 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 851761 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 851760 TACTAACGAGGAT 851748 >seq44 Length=16276492 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 16196842 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 16196901 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 16196902 TACTAACGAGGA 16196913 >seq368 Length=3467158 Score = 96.9 bits (106), Expect = 4e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040 |||| ||| ||| || || || |||||||| | ||| | || | || ||||||| Sbjct 925347 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCTGAGAGAATACGGCCATCCTCTAGCTCT 925288 Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 || || | || || || ||||||||||| | || | || ||||||| | |||||| Sbjct 925287 TTGCCCTCAAAAATCAGACGCTGCTGGTCAGGAGGAATGCCCTCCTTGGCTTGGATTTTG 925228 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 ||||| || ||| ||||| || | ||||| || | |||||||| |||||| | Sbjct 925227 GCTTTGACATTCTCCATGGTGTCACTGGGCTCCACCTCAAGAGTGATGGTCTTGCCCTTC 925168 Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183 | ||||| |||||||| ||||| Sbjct 925167 AAGGTCTTCACAAAGATCTGCAT 925145 >seq253 Length=5273209 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4371671 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 4371730 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4371731 TACTAACGAGGA 4371742 >seq127 Length=8664957 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| Sbjct 8362817 GGGAATCGAACCCTGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTATACTAACGAG 8362876 Query 60136 GATTG 60140 || || Sbjct 8362877 GACTG 8362881 >seq12 Length=25310607 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| |||||||||| |||||||||| ||||||||||||| Sbjct 23264279 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCATGACAGGCGGGGATACTCACCACTA 23264338 Query 60126 TACTACCGAGGA 60137 ||||| ||||| Sbjct 23264339 TACTAATGAGGA 23264350 >seq6 Length=31634872 Score = 89.7 bits (98), Expect = 6e-13 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 60071 CGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 || |||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 12129316 CGTCAGGGAGTCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTA 12129257 Query 60131 CCGA 60134 ||| Sbjct 12129256 ACGA 12129253 >seq107 Length=10112982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||| ||||||||||||||||||||||||||| ||||| |||||||||||| | || Sbjct 8612093 GGGAATCAAACCCTGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTATACTAACAAG 8612152 Query 60136 GA 60137 || Sbjct 8612153 GA 8612154 >seq580 Length=1667376 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||||||||| | | ||||||||||| |||||||||||||||||| | || Sbjct 443504 GGGAATCGAACCCTGGTCTTCAGTGTGACAGGCGGGAATACTCACCACTATACTAACTAG 443563 Query 60136 GATTG 60140 || || Sbjct 443564 GACTG 443568 >seq72 Length=12434827 Score = 82.4 bits (90), Expect = 9e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||| |||||||||||| ||||||||||||| Sbjct 3315298 CTCCCCGTCGGGGAATCGAACCCCAGTCTCCCACGTGACAGGCGGGGATACTCACCACTA 3315239 Query 60126 TACTA 60130 ||||| Sbjct 3315238 TACTA 3315234 >seq5 Length=32993971 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| | |||||||||||||| ||||||||| | ||||||| || |||||||||||| Sbjct 24740484 TCTCCCGGTCAGGGAATCGAACCTTGGTCTCCCACATGACAGGTGGGGATACTCACCACT 24740543 Query 60125 ATACTACCGAGGA 60137 |||||| ||||| Sbjct 24740544 ATACTAATGAGGA 24740556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571656711970520